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Myasthenia gravis

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

Type
Disease or Syndrome
ID
PH213
Version ID
426
Valid event data range
01/01/1999 - 01/07/2016
Sex
Female, Male
Agreement Date
2019-05-20
Coding system
Read codes v2 ICD10 codes Med codes
Tags /Collections
CALIBER Phenotype Library

Definition

At the specified date, a patient is defined as having had 'Myasthenia gravis' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Primary care

  1. 'Myasthenia gravis' diagnosis or history of diagnosis during a consultation

OR Secondary care

  1. ALL diagnoses of 'Myasthenia gravis' or history of diagnosis during a hospitalization

Implementation


Publications

  • Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

Rows: 3
Code Description Disease Medcode Category
F380.00 Myasthenia gravis Myasthenia gravis 5655.0 Diagnosis of Myasthenia gravis
F380100 Juvenile or adult myasthenia gravis Myasthenia gravis 66740.0 Diagnosis of Myasthenia gravis
F380z00 Myasthenia gravis NOS Myasthenia gravis 27515.0 Diagnosis of Myasthenia gravis
Rows: 3
Code Description Disease ReadcodeDescr Readcode
27515.0 Diagnosis of Myasthenia gravis Myasthenia gravis Myasthenia gravis NOS F380z00
5655.0 Diagnosis of Myasthenia gravis Myasthenia gravis Myasthenia gravis F380.00
66740.0 Diagnosis of Myasthenia gravis Myasthenia gravis Juvenile or adult myasthenia gravis F380100
Rows: 1
Code Description Disease Category
G70.0 Myasthenia gravis Myasthenia gravis Diagnosis of Myasthenia gravis

API

To Export Phenotype Details:

Format API
XML site_root/api/v1/public/phenotypes/PH213/version/426/detail/?format=xml
JSON site_root/api/v1/public/phenotypes/PH213/version/426/detail/?format=json
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get details of phenotype

details = get_phenotype_detail_by_version('PH213', '426', api_client=client)

To Export Phenotype Code List:

Format API
XML site_root/api/v1/public/phenotypes/PH213/version/426/export/codes/?format=xml
JSON site_root/api/v1/public/phenotypes/PH213/version/426/export/codes/?format=json
CSV site_root/phenotypes/PH213/version/426/export/codes/
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get codelists of phenotype

codelists = get_phenotype_code_list('PH213', '426', api_client=client)

Version History

Version
ID
Name Owner Publish date
426 Myasthenia gravis ieuan.scanlon 2021-10-06 currently shown

Export - export all codes into a csv file/JSON/XML for the current phenotype version.

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