Phenotype Library | phenotype: Myasthenia gravis

Myasthenia gravis

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

PH213

Version ID

426

Type

Disease or Syndrome

Data Sources

CPRD GOLD , HES Admitted Patient Care data for CPRD GOLD

Valid event data range

01/01/1999 - 01/07/2016

Sex

♀ Female ♂ Male

Agreement Date

2019-05-20

Coding system

Read codes v2 ICD10 codes Med codes

Collections

CALIBER Phenotype Library

Definition

At the specified date, a patient is defined as having had 'Myasthenia gravis' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Primary care

'Myasthenia gravis' diagnosis or history of diagnosis during a consultation

OR Secondary care

ALL diagnoses of 'Myasthenia gravis' or history of diagnosis during a hospitalization

Implementation

PhenoFlow Implementation:

https://kclhi.org/phenoflow/phenotype/download/618

Publications

Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

CSV

JSON

XML

Expand All / Collapse All

C1292/3723 Myasthenia gravis - Primary care - Read codes v2

Rows: 3

Code	Description	Disease	Medcode	Category
F380.00	Myasthenia gravis	Myasthenia gravis	5655.0	Diagnosis of Myasthenia gravis
F380100	Juvenile or adult myasthenia gravis	Myasthenia gravis	66740.0	Diagnosis of Myasthenia gravis
F380z00	Myasthenia gravis NOS	Myasthenia gravis	27515.0	Diagnosis of Myasthenia gravis

C1293/3725 Myasthenia gravis - Primary care - Med codes

Rows: 3

Code	Description	Disease	ReadcodeDescr	Readcode
27515.0	Diagnosis of Myasthenia gravis	Myasthenia gravis	Myasthenia gravis NOS	F380z00
5655.0	Diagnosis of Myasthenia gravis	Myasthenia gravis	Myasthenia gravis	F380.00
66740.0	Diagnosis of Myasthenia gravis	Myasthenia gravis	Juvenile or adult myasthenia gravis	F380100

C1294/3727 Myasthenia gravis - Secondary care - Diagnoses - ICD10 codes

Rows: 1

Code	Description	Disease	Category
G70.0	Myasthenia gravis	Myasthenia gravis	Diagnosis of Myasthenia gravis

API

To Export Phenotype Details:

Format	API
XML	site_root/api/v1/public/phenotypes/PH213/version/426/detail/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH213/version/426/detail/?format=json
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get details of phenotype details = get_phenotype_detail_by_version('PH213', '426', api_client=client)`

To Export Phenotype Code List:

Format	API
XML	site_root/api/v1/public/phenotypes/PH213/version/426/export/codes/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH213/version/426/export/codes/?format=json
CSV	site_root/phenotypes/PH213/version/426/export/codes/
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get codelists of phenotype codelists = get_phenotype_code_list('PH213', '426', api_client=client)`

Version History

Version ID	Name	Owner	Publish date
426	Myasthenia gravis	ieuan.scanlon	2021-10-06	currently shown