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Obesity

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

Type
Disease or Syndrome
ID
PH221
Version ID
442
Valid event data range
01/01/1999 - 01/07/2016
Sex
Female, Male
Agreement Date
2019-05-20
Coding system
Read codes v2 ICD10 codes Med codes
Tags /Collections
CALIBER Phenotype Library

Definition

At the specified date, a patient is defined as having had 'Obesity' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Primary care

  1. 'Obesity' diagnosis or history of diagnosis or procedure during a consultation

OR

  1. IF enttype = 13 (Weight) available on or before specified date AND data3 not missing, BMI = data3. If BMI > 30, patient is defined as having had 'Obesity'. OR

  2. If enttype = 13 (Weight) available on or before specified date AND data3 missing, BMI = data1 (enttype 13) /(data2 ^2) (enttype 14 = Height). If BMI > 30, patient is defined as having had 'Obesity'. IF height not available on same eventdate as weight, use most recent height for age > 18 years. OR Secondary care (ICD10)

  3. ALL diagnoses of 'Obesity' or history of diagnosis during a hospitalization

Implementation


Publications

  • Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

Rows: 70
Code Description Disease Medcode Category
1444.00 H/O: obesity Obesity 16196.0 History of Obesity
212Q.00 Obesity resolved Obesity 52703.0 History of Obesity
222A.00 O/E - obese Obesity 59780.0 Diagnosis of Obesity
22A5.11 O/E - obese Obesity 7984.0 Diagnosis of Obesity
22K5.00 Body mass index 30+ - obesity Obesity 13278.0 Diagnosis of Obesity
22K7.00 Body mass index 40+ - severely obese Obesity 22556.0 Diagnosis of Obesity
66C..00 Obesity monitoring Obesity 11461.0 History of Obesity
66C1.00 Initial obesity assessment Obesity 38658.0 Diagnosis of Obesity
66C2.00 Follow-up obesity assessment Obesity 29538.0 History of Obesity
66C4.00 Has seen dietician - obesity Obesity 3176.0 Diagnosis of Obesity
66C5.00 Treatment of obesity changed Obesity 64712.0 Diagnosis of Obesity
66C6.00 Treatment of obesity started Obesity 38632.0 Diagnosis of Obesity
66CE.00 Reason for obesity therapy - occupational Obesity 17444.0 Diagnosis of Obesity
66CZ.00 Obesity monitoring NOS Obesity 40153.0 History of Obesity
7611400.0 Sleeve gastrectomy and duodenal switch Obesity 93378.0 Procedure for Obesity
7611500.0 Sleeve gastrectomy NEC Obesity 89259.0 Procedure for Obesity
7611600.0 Laparoscopic sleeve gastrectomy Obesity 89148.0 Procedure for Obesity
7613100.0 Partitioning of stomach Obesity 34119.0 Procedure for Obesity
7613111.0 Mason vertical banded gastroplasty Obesity 59622.0 Procedure for Obesity
7613200.0 Laparoscopic adjustable gastric banding Obesity 18863.0 Procedure for Obesity
7613300.0 Partitioning of stomach using band Obesity 88474.0 Procedure for Obesity
7613400.0 Partitioning of stomach using staples Obesity 56926.0 Procedure for Obesity
7613500.0 Partitioning of stomach NEC Obesity 90600.0 Procedure for Obesity
7613600.0 Maintenance of gastric band Obesity 97691.0 Procedure for Obesity
7614100.0 Bypass of stomach by anastomosis of stomach to duodenum Obesity 40977.0 Procedure for Obesity
7615000.0 Bypass stomach by anastomosis stomach to transposed jejunum Obesity 39797.0 Procedure for Obesity
7616000.0 Bypass of stomach by anastomosis of stomach to jejunum NEC Obesity 7082.0 Procedure for Obesity
7616013.0 Mason high gastric bypass Obesity 92957.0 Procedure for Obesity
7616015.0 Printer high gastric bypass Obesity 48417.0 Procedure for Obesity
7616600.0 Laparoscopic gastric bypass Obesity 95929.0 Procedure for Obesity
761A500 Removal of gastric band Obesity 90454.0 Procedure for Obesity
7633.00 Bypass of jejunum Obesity 39123.0 Procedure for Obesity
7633000.0 Bypass of jejunum by anastomosis of jejunum to jejunum Obesity 56107.0 Procedure for Obesity
7633100.0 Bypass of jejunum by anastomosis of jejunum to ileum Obesity 19929.0 Procedure for Obesity
7633200.0 Bypass of jejunum by anastomosis of jejunum to colon Obesity 62848.0 Procedure for Obesity
7633y00 Other specified bypass of jejunum Obesity 64123.0 Procedure for Obesity
7633z00 Bypass of jejunum NOS Obesity 60421.0 Procedure for Obesity
7642500.0 Duodenal switch Obesity 90517.0 Procedure for Obesity
9OK..00 Obesity monitoring admin. Obesity 32843.0 History of Obesity
9OK..11 Obesity clinic administration Obesity 21744.0 History of Obesity
9OK1.00 Attends obesity monitoring Obesity 52034.0 History of Obesity
9OK2.00 Refuses obesity monitoring Obesity 67516.0 History of Obesity
9OK3.00 Obesity monitoring default Obesity 52036.0 History of Obesity
9OK4.00 Obesity monitoring 1st letter Obesity 49409.0 History of Obesity
9OK5.00 Obesity monitoring 2nd letter Obesity 55586.0 History of Obesity
9OK6.00 Obesity monitoring 3rd letter Obesity 55585.0 History of Obesity
9OK7.00 Obesity monitoring verbal inv. Obesity 70950.0 History of Obesity
9OK8.00 Obesity monitor phone invite Obesity 67517.0 History of Obesity
9OKA.00 Obesity monitoring check done Obesity 47439.0 History of Obesity
9OKZ.00 Obesity monitoring admin.NOS Obesity 52735.0 History of Obesity
C38..00 Obesity and other hyperalimentation Obesity 66406.0 Diagnosis of Obesity
C380.00 Obesity Obesity 430.0 Diagnosis of Obesity
C380000 Obesity due to excess calories Obesity 38799.0 Diagnosis of Obesity
C380100 Drug-induced obesity Obesity 49250.0 Diagnosis of Obesity
C380200 Extreme obesity with alveolar hypoventilation Obesity 38059.0 Diagnosis of Obesity
C380300 Morbid obesity Obesity 8854.0 Diagnosis of Obesity
C380400 Central obesity Obesity 22695.0 Diagnosis of Obesity
C380500 Generalised obesity Obesity 25968.0 Diagnosis of Obesity
C380600 Adult-onset obesity Obesity 104129.0 Diagnosis of Obesity
C380700 Lifelong obesity Obesity 104421.0 Diagnosis of Obesity
C38y.11 Pickwickian syndrome Obesity 24755.0 Diagnosis of Obesity
C38y000 Pickwickian syndrome Obesity 38294.0 Diagnosis of Obesity
C38y011 Obesity hypoventilation syndrome Obesity 103574.0 Diagnosis of Obesity
C38z.00 Obesity and other hyperalimentation NOS Obesity 70898.0 Diagnosis of Obesity
C38z000 Simple obesity NOS Obesity 11401.0 Diagnosis of Obesity
Cyu7.00 [X]Obesity and other hyperalimentation Obesity 52782.0 Diagnosis of Obesity
Cyu7000 [X]Other obesity Obesity 69757.0 Diagnosis of Obesity
ZC2CM00 Dietary advice for obesity Obesity 10728.0 Diagnosis of Obesity
ZV45P00 [V]Presence of gastric bypass Obesity 97014.0 History of Obesity
ZV65319 [V]Dietary counselling in obesity Obesity 17477.0 Diagnosis of Obesity
Rows: 70
Code Description Disease ReadcodeDescr Readcode
103574.0 Diagnosis of Obesity Obesity Obesity hypoventilation syndrome C38y011
104129.0 Diagnosis of Obesity Obesity Adult-onset obesity C380600
104421.0 Diagnosis of Obesity Obesity Lifelong obesity C380700
10728.0 Diagnosis of Obesity Obesity Dietary advice for obesity ZC2CM00
11401.0 Diagnosis of Obesity Obesity Simple obesity NOS C38z000
11461.0 History of Obesity Obesity Obesity monitoring 66C..00
13278.0 Diagnosis of Obesity Obesity Body mass index 30+ - obesity 22K5.00
16196.0 History of Obesity Obesity H/O: obesity 1444.00
17444.0 Diagnosis of Obesity Obesity Reason for obesity therapy - occupational 66CE.00
17477.0 Diagnosis of Obesity Obesity [V]Dietary counselling in obesity ZV65319
18863.0 Procedure for Obesity Obesity Laparoscopic adjustable gastric banding 7613200.0
19929.0 Procedure for Obesity Obesity Bypass of jejunum by anastomosis of jejunum to ileum 7633100.0
21744.0 History of Obesity Obesity Obesity clinic administration 9OK..11
22556.0 Diagnosis of Obesity Obesity Body mass index 40+ - severely obese 22K7.00
22695.0 Diagnosis of Obesity Obesity Central obesity C380400
24755.0 Diagnosis of Obesity Obesity Pickwickian syndrome C38y.11
25968.0 Diagnosis of Obesity Obesity Generalised obesity C380500
29538.0 History of Obesity Obesity Follow-up obesity assessment 66C2.00
3176.0 Diagnosis of Obesity Obesity Has seen dietician - obesity 66C4.00
32843.0 History of Obesity Obesity Obesity monitoring admin. 9OK..00
34119.0 Procedure for Obesity Obesity Partitioning of stomach 7613100.0
38059.0 Diagnosis of Obesity Obesity Extreme obesity with alveolar hypoventilation C380200
38294.0 Diagnosis of Obesity Obesity Pickwickian syndrome C38y000
38632.0 Diagnosis of Obesity Obesity Treatment of obesity started 66C6.00
38658.0 Diagnosis of Obesity Obesity Initial obesity assessment 66C1.00
38799.0 Diagnosis of Obesity Obesity Obesity due to excess calories C380000
39123.0 Procedure for Obesity Obesity Bypass of jejunum 7633.00
39797.0 Procedure for Obesity Obesity Bypass stomach by anastomosis stomach to transposed jejunum 7615000.0
40153.0 History of Obesity Obesity Obesity monitoring NOS 66CZ.00
40977.0 Procedure for Obesity Obesity Bypass of stomach by anastomosis of stomach to duodenum 7614100.0
430.0 Diagnosis of Obesity Obesity Obesity C380.00
47439.0 History of Obesity Obesity Obesity monitoring check done 9OKA.00
48417.0 Procedure for Obesity Obesity Printer high gastric bypass 7616015.0
49250.0 Diagnosis of Obesity Obesity Drug-induced obesity C380100
49409.0 History of Obesity Obesity Obesity monitoring 1st letter 9OK4.00
52034.0 History of Obesity Obesity Attends obesity monitoring 9OK1.00
52036.0 History of Obesity Obesity Obesity monitoring default 9OK3.00
52703.0 History of Obesity Obesity Obesity resolved 212Q.00
52735.0 History of Obesity Obesity Obesity monitoring admin.NOS 9OKZ.00
52782.0 Diagnosis of Obesity Obesity [X]Obesity and other hyperalimentation Cyu7.00
55585.0 History of Obesity Obesity Obesity monitoring 3rd letter 9OK6.00
55586.0 History of Obesity Obesity Obesity monitoring 2nd letter 9OK5.00
56107.0 Procedure for Obesity Obesity Bypass of jejunum by anastomosis of jejunum to jejunum 7633000.0
56926.0 Procedure for Obesity Obesity Partitioning of stomach using staples 7613400.0
59622.0 Procedure for Obesity Obesity Mason vertical banded gastroplasty 7613111.0
59780.0 Diagnosis of Obesity Obesity O/E - obese 222A.00
60421.0 Procedure for Obesity Obesity Bypass of jejunum NOS 7633z00
62848.0 Procedure for Obesity Obesity Bypass of jejunum by anastomosis of jejunum to colon 7633200.0
64123.0 Procedure for Obesity Obesity Other specified bypass of jejunum 7633y00
64712.0 Diagnosis of Obesity Obesity Treatment of obesity changed 66C5.00
66406.0 Diagnosis of Obesity Obesity Obesity and other hyperalimentation C38..00
67516.0 History of Obesity Obesity Refuses obesity monitoring 9OK2.00
67517.0 History of Obesity Obesity Obesity monitor phone invite 9OK8.00
69757.0 Diagnosis of Obesity Obesity [X]Other obesity Cyu7000
7082.0 Procedure for Obesity Obesity Bypass of stomach by anastomosis of stomach to jejunum NEC 7616000.0
70898.0 Diagnosis of Obesity Obesity Obesity and other hyperalimentation NOS C38z.00
70950.0 History of Obesity Obesity Obesity monitoring verbal inv. 9OK7.00
7984.0 Diagnosis of Obesity Obesity O/E - obese 22A5.11
88474.0 Procedure for Obesity Obesity Partitioning of stomach using band 7613300.0
8854.0 Diagnosis of Obesity Obesity Morbid obesity C380300
89148.0 Procedure for Obesity Obesity Laparoscopic sleeve gastrectomy 7611600.0
89259.0 Procedure for Obesity Obesity Sleeve gastrectomy NEC 7611500.0
90454.0 Procedure for Obesity Obesity Removal of gastric band 761A500
90517.0 Procedure for Obesity Obesity Duodenal switch 7642500.0
90600.0 Procedure for Obesity Obesity Partitioning of stomach NEC 7613500.0
92957.0 Procedure for Obesity Obesity Mason high gastric bypass 7616013.0
93378.0 Procedure for Obesity Obesity Sleeve gastrectomy and duodenal switch 7611400.0
95929.0 Procedure for Obesity Obesity Laparoscopic gastric bypass 7616600.0
97014.0 History of Obesity Obesity [V]Presence of gastric bypass ZV45P00
97691.0 Procedure for Obesity Obesity Maintenance of gastric band 7613600.0
Rows: 1
Code Description Disease Category
E66 Obesity Obesity Diagnosis of Obesity

API

To Export Phenotype Details:

Format API
XML site_root/api/v1/public/phenotypes/PH221/version/442/detail/?format=xml
JSON site_root/api/v1/public/phenotypes/PH221/version/442/detail/?format=json
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get details of phenotype

details = get_phenotype_detail_by_version('PH221', '442', api_client=client)

To Export Phenotype Code List:

Format API
XML site_root/api/v1/public/phenotypes/PH221/version/442/export/codes/?format=xml
JSON site_root/api/v1/public/phenotypes/PH221/version/442/export/codes/?format=json
CSV site_root/phenotypes/PH221/version/442/export/codes/
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get codelists of phenotype

codelists = get_phenotype_code_list('PH221', '442', api_client=client)

Version History

Version
ID
Name Owner Publish date
442 Obesity ieuan.scanlon 2021-10-06 currently shown

Export - export all codes into a csv file/JSON/XML for the current phenotype version.

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