Phenotypes > Osteoporosis

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Osteoporosis

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

ID
PH225
Version ID
450
Type
Disease or Syndrome
Data Sources
CPRD GOLD , HES Admitted Patient Care data for CPRD GOLD
Valid event data range
01/01/1999 - 01/07/2016
Sex
♀  Female ♂  Male
Agreement Date
2019-05-20
Coding system
Read codes v2 ICD10 codes Med codes
Collections
CALIBER Phenotype Library
Tags
No tags

Definition

At the specified date, a patient is defined as having had Fibromatoses IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Primary care

  1. Fibromatoses diagnosis or history of diagnosis or procedure during a consultation

OR Secondary care (ICD10)

  1. ALL diagnoses of Fibromatoses or history of diagnosis during a hospitalization OR Secondary care (OPCS4)

  2. ALL procedures for Fibromatoses during a hospitalization

Implementation


https://kclhi.org/phenoflow/phenotype/download/652

Publications

  • Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

Expand All  /  Collapse All
Rows: 53
Code Description Disease Medcode Category
14GB.00 History of osteoporosis Osteoporosis 99817.0 History of Osteoporosis
58EG.00 Hip DXA scan result osteoporotic Osteoporosis 42354.0 Diagnosis of Osteoporosis
58EM.00 Lumbar DXA scan result osteoporotic Osteoporosis 39217.0 Diagnosis of Osteoporosis
58EV.00 Femoral neck DEXA scan result osteoporotic Osteoporosis 96342.0 Diagnosis of Osteoporosis
66a..00 Osteoporosis monitoring Osteoporosis 11603.0 History of Osteoporosis
9Od..00 Osteoporosis monitoring administration Osteoporosis 36796.0 History of Osteoporosis
9Od0.00 Attends osteoporosis monitoring Osteoporosis 65163.0 History of Osteoporosis
9Od2.00 Osteoporosis monitoring default Osteoporosis 92887.0 History of Osteoporosis
9Od3.00 Osteoporosis monitoring first letter Osteoporosis 68122.0 History of Osteoporosis
9Od4.00 Osteoporosis monitoring second letter Osteoporosis 93455.0 History of Osteoporosis
9Od5.00 Osteoporosis monitoring third letter Osteoporosis 102017.0 History of Osteoporosis
9Od6.00 Osteoporosis monitoring verbal invitation Osteoporosis 105290.0 History of Osteoporosis
9Od7.00 Osteoporosis monitoring telephone invitation Osteoporosis 61121.0 History of Osteoporosis
9Od8.00 Osteoporosis monitoring deleted Osteoporosis 96779.0 History of Osteoporosis
9Od9.00 Osteoporosis monitoring check done Osteoporosis 25534.0 History of Osteoporosis
9kj..00 Osteoporosis - enhanced services administration Osteoporosis 98433.0 History of Osteoporosis
9kj0.00 Bone sparing drug treatment offered for osteoporosis - ESA Osteoporosis 98760.0 History of Osteoporosis
N330.00 Osteoporosis Osteoporosis 277.0 Diagnosis of Osteoporosis
N330000 Osteoporosis, unspecified Osteoporosis 14967.0 Diagnosis of Osteoporosis
N330100 Senile osteoporosis Osteoporosis 16307.0 Diagnosis of Osteoporosis
N330200 Postmenopausal osteoporosis Osteoporosis 9700.0 Diagnosis of Osteoporosis
N330300 Idiopathic osteoporosis Osteoporosis 40428.0 Diagnosis of Osteoporosis
N330400 Dissuse osteoporosis Osteoporosis 62702.0 Diagnosis of Osteoporosis
N330500 Drug-induced osteoporosis Osteoporosis 24093.0 Diagnosis of Osteoporosis
N330600 Postoophorectomy osteoporosis Osteoporosis 70349.0 Diagnosis of Osteoporosis
N330700 Postsurgical malabsorption osteoporosis Osteoporosis 93655.0 Diagnosis of Osteoporosis
N330A00 Osteoporosis in endocrine disorders Osteoporosis 31580.0 Diagnosis of Osteoporosis
N330B00 Vertebral osteoporosis Osteoporosis 3346.0 Diagnosis of Osteoporosis
N330C00 Osteoporosis localized to spine Osteoporosis 16857.0 Diagnosis of Osteoporosis
N330D00 Osteoporosis due to corticosteroids Osteoporosis 25650.0 Diagnosis of Osteoporosis
N330z00 Osteoporosis NOS Osteoporosis 34798.0 Diagnosis of Osteoporosis
N331200 Postoophorectomy osteoporosis with pathological fracture Osteoporosis 39334.0 Diagnosis of Osteoporosis
N331300 Osteoporosis of disuse with pathological fracture Osteoporosis 33526.0 Diagnosis of Osteoporosis
N331400 Postsurgical malabsorption osteoporosis with path fracture Osteoporosis 68019.0 Diagnosis of Osteoporosis
N331500 Drug-induced osteoporosis with pathological fracture Osteoporosis 46894.0 Diagnosis of Osteoporosis
N331600 Idiopathic osteoporosis with pathological fracture Osteoporosis 27597.0 Diagnosis of Osteoporosis
N331800 Osteoporosis + pathological fracture lumbar vertebrae Osteoporosis 17377.0 Diagnosis of Osteoporosis
N331900 Osteoporosis + pathological fracture thoracic vertebrae Osteoporosis 12673.0 Diagnosis of Osteoporosis
N331A00 Osteoporosis + pathological fracture cervical vertebrae Osteoporosis 48772.0 Diagnosis of Osteoporosis
N331B00 Postmenopausal osteoporosis with pathological fracture Osteoporosis 38395.0 Diagnosis of Osteoporosis
N331H00 Collapse of cervical vertebra due to osteoporosis Osteoporosis 45736.0 Diagnosis of Osteoporosis
N331J00 Collapse of lumbar vertebra due to osteoporosis Osteoporosis 5841.0 Diagnosis of Osteoporosis
N331K00 Collapse of thoracic vertebra due to osteoporosis Osteoporosis 19048.0 Diagnosis of Osteoporosis
N331L00 Collapse of vertebra due to osteoporosis NOS Osteoporosis 4013.0 Diagnosis of Osteoporosis
N331M00 Fragility fracture due to unspecified osteoporosis Osteoporosis 11503.0 Diagnosis of Osteoporosis
N331M11 Minimal trauma fracture due to unspecified osteoporosis Osteoporosis 93705.0 Diagnosis of Osteoporosis
N331N00 Fragility fracture Osteoporosis 93497.0 Diagnosis of Osteoporosis
N331N11 Minimal trauma fracture Osteoporosis 93981.0 Diagnosis of Osteoporosis
N374600 Osteoporotic kyphosis Osteoporosis 36432.0 Diagnosis of Osteoporosis
NyuB000 [X]Other osteoporosis with pathological fracture Osteoporosis 57301.0 Diagnosis of Osteoporosis
NyuB100 [X]Other osteoporosis Osteoporosis 41755.0 Diagnosis of Osteoporosis
NyuB200 [X]Osteoporosis in other disorders classified elsewhere Osteoporosis 102730.0 Diagnosis of Osteoporosis
NyuB800 [X]Unspecified osteoporosis with pathological fracture Osteoporosis 18825.0 Diagnosis of Osteoporosis
Rows: 53
Code Description Disease ReadcodeDescr Readcode
102017.0 History of Osteoporosis Osteoporosis Osteoporosis monitoring third letter 9Od5.00
102730.0 Diagnosis of Osteoporosis Osteoporosis [X]Osteoporosis in other disorders classified elsewhere NyuB200
105290.0 History of Osteoporosis Osteoporosis Osteoporosis monitoring verbal invitation 9Od6.00
11503.0 Diagnosis of Osteoporosis Osteoporosis Fragility fracture due to unspecified osteoporosis N331M00
11603.0 History of Osteoporosis Osteoporosis Osteoporosis monitoring 66a..00
12673.0 Diagnosis of Osteoporosis Osteoporosis Osteoporosis + pathological fracture thoracic vertebrae N331900
14967.0 Diagnosis of Osteoporosis Osteoporosis Osteoporosis, unspecified N330000
16307.0 Diagnosis of Osteoporosis Osteoporosis Senile osteoporosis N330100
16857.0 Diagnosis of Osteoporosis Osteoporosis Osteoporosis localized to spine N330C00
17377.0 Diagnosis of Osteoporosis Osteoporosis Osteoporosis + pathological fracture lumbar vertebrae N331800
18825.0 Diagnosis of Osteoporosis Osteoporosis [X]Unspecified osteoporosis with pathological fracture NyuB800
19048.0 Diagnosis of Osteoporosis Osteoporosis Collapse of thoracic vertebra due to osteoporosis N331K00
24093.0 Diagnosis of Osteoporosis Osteoporosis Drug-induced osteoporosis N330500
25534.0 History of Osteoporosis Osteoporosis Osteoporosis monitoring check done 9Od9.00
25650.0 Diagnosis of Osteoporosis Osteoporosis Osteoporosis due to corticosteroids N330D00
27597.0 Diagnosis of Osteoporosis Osteoporosis Idiopathic osteoporosis with pathological fracture N331600
277.0 Diagnosis of Osteoporosis Osteoporosis Osteoporosis N330.00
31580.0 Diagnosis of Osteoporosis Osteoporosis Osteoporosis in endocrine disorders N330A00
3346.0 Diagnosis of Osteoporosis Osteoporosis Vertebral osteoporosis N330B00
33526.0 Diagnosis of Osteoporosis Osteoporosis Osteoporosis of disuse with pathological fracture N331300
34798.0 Diagnosis of Osteoporosis Osteoporosis Osteoporosis NOS N330z00
36432.0 Diagnosis of Osteoporosis Osteoporosis Osteoporotic kyphosis N374600
36796.0 History of Osteoporosis Osteoporosis Osteoporosis monitoring administration 9Od..00
38395.0 Diagnosis of Osteoporosis Osteoporosis Postmenopausal osteoporosis with pathological fracture N331B00
39217.0 Diagnosis of Osteoporosis Osteoporosis Lumbar DXA scan result osteoporotic 58EM.00
39334.0 Diagnosis of Osteoporosis Osteoporosis Postoophorectomy osteoporosis with pathological fracture N331200
4013.0 Diagnosis of Osteoporosis Osteoporosis Collapse of vertebra due to osteoporosis NOS N331L00
40428.0 Diagnosis of Osteoporosis Osteoporosis Idiopathic osteoporosis N330300
41755.0 Diagnosis of Osteoporosis Osteoporosis [X]Other osteoporosis NyuB100
42354.0 Diagnosis of Osteoporosis Osteoporosis Hip DXA scan result osteoporotic 58EG.00
45736.0 Diagnosis of Osteoporosis Osteoporosis Collapse of cervical vertebra due to osteoporosis N331H00
46894.0 Diagnosis of Osteoporosis Osteoporosis Drug-induced osteoporosis with pathological fracture N331500
48772.0 Diagnosis of Osteoporosis Osteoporosis Osteoporosis + pathological fracture cervical vertebrae N331A00
57301.0 Diagnosis of Osteoporosis Osteoporosis [X]Other osteoporosis with pathological fracture NyuB000
5841.0 Diagnosis of Osteoporosis Osteoporosis Collapse of lumbar vertebra due to osteoporosis N331J00
61121.0 History of Osteoporosis Osteoporosis Osteoporosis monitoring telephone invitation 9Od7.00
62702.0 Diagnosis of Osteoporosis Osteoporosis Dissuse osteoporosis N330400
65163.0 History of Osteoporosis Osteoporosis Attends osteoporosis monitoring 9Od0.00
68019.0 Diagnosis of Osteoporosis Osteoporosis Postsurgical malabsorption osteoporosis with path fracture N331400
68122.0 History of Osteoporosis Osteoporosis Osteoporosis monitoring first letter 9Od3.00
70349.0 Diagnosis of Osteoporosis Osteoporosis Postoophorectomy osteoporosis N330600
92887.0 History of Osteoporosis Osteoporosis Osteoporosis monitoring default 9Od2.00
93455.0 History of Osteoporosis Osteoporosis Osteoporosis monitoring second letter 9Od4.00
93497.0 Diagnosis of Osteoporosis Osteoporosis Fragility fracture N331N00
93655.0 Diagnosis of Osteoporosis Osteoporosis Postsurgical malabsorption osteoporosis N330700
93705.0 Diagnosis of Osteoporosis Osteoporosis Minimal trauma fracture due to unspecified osteoporosis N331M11
93981.0 Diagnosis of Osteoporosis Osteoporosis Minimal trauma fracture N331N11
96342.0 Diagnosis of Osteoporosis Osteoporosis Femoral neck DEXA scan result osteoporotic 58EV.00
96779.0 History of Osteoporosis Osteoporosis Osteoporosis monitoring deleted 9Od8.00
9700.0 Diagnosis of Osteoporosis Osteoporosis Postmenopausal osteoporosis N330200
98433.0 History of Osteoporosis Osteoporosis Osteoporosis - enhanced services administration 9kj..00
98760.0 History of Osteoporosis Osteoporosis Bone sparing drug treatment offered for osteoporosis - ESA 9kj0.00
99817.0 History of Osteoporosis Osteoporosis History of osteoporosis 14GB.00
Rows: 3
Code Description Disease Category
M80 Osteoporosis with pathological fracture Osteoporosis Diagnosis of Osteoporosis
M81 Osteoporosis without pathological fracture Osteoporosis Diagnosis of Osteoporosis
M82 Osteoporosis in diseases classified elsewhere Osteoporosis Diagnosis of Osteoporosis

API

To Export Phenotype Details:

Format API
XML site_root/api/v1/public/phenotypes/PH225/version/450/detail/?format=xml
JSON site_root/api/v1/public/phenotypes/PH225/version/450/detail/?format=json
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get details of phenotype

details = get_phenotype_detail_by_version('PH225', '450', api_client=client)

To Export Phenotype Code List:

Format API
XML site_root/api/v1/public/phenotypes/PH225/version/450/export/codes/?format=xml
JSON site_root/api/v1/public/phenotypes/PH225/version/450/export/codes/?format=json
CSV site_root/phenotypes/PH225/version/450/export/codes/
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get codelists of phenotype

codelists = get_phenotype_code_list('PH225', '450', api_client=client)

Version History

Version
ID		 Name Owner Publish date
450 Osteoporosis ieuan.scanlon 2021-10-06 currently shown

Export - export all codes into a csv file/JSON/XML for the current phenotype version.

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