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Infection of other or unspecified genitourinary system

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

ID
PH227
Version ID
454
Type
Disease or Syndrome
Valid event data range
01/01/1999 - 01/07/2016
Sex
♀  Female ♂  Male
Agreement Date
2019-05-20
Coding system
ICD10 codes
Collections
CALIBER Phenotype Library
Tags
No tags

Definition

At the specified date, a patient is defined as having had 'Infection of other or unspecified genitourinary system' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Secondary care

  1. ALL diagnoses of 'Infection of other or unspecified genitourinary system' or history of diagnosis during a hospitalization OR

  2. ALL possible diagnosis of 'Infection of other or unspecified genitourinary system' during a hospitalization IF NO record satisfying criteria for Urinary Tract Infections, Infection of male genital system or Female pelvic inflammatory disease 30 days before or 30 days after the first event date for 'Infection of other or unspecified genitourinary system'.

Implementation


Publications

  • Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

Rows: 18
Code Description Disease Category
A18.1 Tuberculosis of genitourinary system Infection of other or unspecified genitourinary system Possible diagnosis of Infection of other or unspecified genitourinary system
A51.0 Primary genital syphilis Infection of other or unspecified genitourinary system Possible diagnosis of Infection of other or unspecified genitourinary system
A54.0 Gonococcal infection of lower genitourinary tract without periurethral or accessory gland abscess Infection of other or unspecified genitourinary system Possible diagnosis of Infection of other or unspecified genitourinary system
A54.1 Gonococcal infection of lower genitourinary tract with periurethral and accessory gland abscess Infection of other or unspecified genitourinary system Possible diagnosis of Infection of other or unspecified genitourinary system
A54.2 Gonococcal pelviperitonitis and other gonococcal genitourinary infections Infection of other or unspecified genitourinary system Possible diagnosis of Infection of other or unspecified genitourinary system
A56.0 Chlamydial infection of lower genitourinary tract Infection of other or unspecified genitourinary system Possible diagnosis of Infection of other or unspecified genitourinary system
A56.1 Chlamydial infection of pelviperitoneum and other genitourinary organs Infection of other or unspecified genitourinary system Possible diagnosis of Infection of other or unspecified genitourinary system
A56.2 Chlamydial infection of genitourinary tract, unspecified Infection of other or unspecified genitourinary system Possible diagnosis of Infection of other or unspecified genitourinary system
A57 Chancroid Infection of other or unspecified genitourinary system Possible diagnosis of Infection of other or unspecified genitourinary system
A58 Granuloma inguinale Infection of other or unspecified genitourinary system Possible diagnosis of Infection of other or unspecified genitourinary system
A59.0 Urogenital trichomoniasis Infection of other or unspecified genitourinary system Possible diagnosis of Infection of other or unspecified genitourinary system
A60.0 Herpesviral infection of genitalia and urogenital tract Infection of other or unspecified genitourinary system Possible diagnosis of Infection of other or unspecified genitourinary system
B37.3 Candidiasis of vulva and vagina Infection of other or unspecified genitourinary system Diagnosis of Infection of other or unspecified genitourinary system
B37.4 Candidiasis of other urogenital sites Infection of other or unspecified genitourinary system Possible diagnosis of Infection of other or unspecified genitourinary system
B90.1 Sequelae of genitourinary tuberculosis Infection of other or unspecified genitourinary system Possible diagnosis of Infection of other or unspecified genitourinary system
N75.1 Abscess of Bartholin's gland Infection of other or unspecified genitourinary system Diagnosis of Infection of other or unspecified genitourinary system
N77.0 Ulceration of vulva in infectious and parasitic diseases classified elsewhere Infection of other or unspecified genitourinary system Diagnosis of Infection of other or unspecified genitourinary system
N77.1 Vaginitis, vulvitis and vulvovaginitis in infectious and parasitic diseases classified elsewhere Infection of other or unspecified genitourinary system Diagnosis of Infection of other or unspecified genitourinary system

API

To Export Phenotype Details:

Format API
XML site_root/api/v1/public/phenotypes/PH227/version/454/detail/?format=xml
JSON site_root/api/v1/public/phenotypes/PH227/version/454/detail/?format=json
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get details of phenotype

details = get_phenotype_detail_by_version('PH227', '454', api_client=client)

To Export Phenotype Code List:

Format API
XML site_root/api/v1/public/phenotypes/PH227/version/454/export/codes/?format=xml
JSON site_root/api/v1/public/phenotypes/PH227/version/454/export/codes/?format=json
CSV site_root/phenotypes/PH227/version/454/export/codes/
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get codelists of phenotype

codelists = get_phenotype_code_list('PH227', '454', api_client=client)

Version History

Version
ID
Name Owner Publish date
454 Infection of other or unspecified genitourinary system ieuan.scanlon 2021-10-06 currently shown

Export - export all codes into a csv file/JSON/XML for the current phenotype version.

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