Phenotype Library | phenotype: Infection of other or unspecified genitourinary system

Infection of other or unspecified genitourinary system

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

PH227

Version ID

454

Type

Disease or Syndrome

Data Sources

HES Admitted Patient Care data for CPRD GOLD

Valid event data range

01/01/1999 - 01/07/2016

Sex

♀ Female ♂ Male

Agreement Date

2019-05-20

Coding system

ICD10 codes

Collections

CALIBER Phenotype Library

Definition

At the specified date, a patient is defined as having had 'Infection of other or unspecified genitourinary system' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Secondary care

ALL diagnoses of 'Infection of other or unspecified genitourinary system' or history of diagnosis during a hospitalization OR
ALL possible diagnosis of 'Infection of other or unspecified genitourinary system' during a hospitalization IF NO record satisfying criteria for Urinary Tract Infections, Infection of male genital system or Female pelvic inflammatory disease 30 days before or 30 days after the first event date for 'Infection of other or unspecified genitourinary system'.

Implementation

PhenoFlow Implementation:

https://kclhi.org/phenoflow/phenotype/download/658

Publications

Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

CSV

JSON

XML

Expand All / Collapse All

C1332/3803 Infection of other or unspecified genitourinary system - Secondary care - Diagnoses - ICD10 codes

Rows: 18

API

To Export Phenotype Details:

Format	API
XML	site_root/api/v1/public/phenotypes/PH227/version/454/detail/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH227/version/454/detail/?format=json
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get details of phenotype details = get_phenotype_detail_by_version('PH227', '454', api_client=client)`

To Export Phenotype Code List:

Format	API
XML	site_root/api/v1/public/phenotypes/PH227/version/454/export/codes/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH227/version/454/export/codes/?format=json
CSV	site_root/phenotypes/PH227/version/454/export/codes/
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get codelists of phenotype codelists = get_phenotype_code_list('PH227', '454', api_client=client)`

Version History

Version ID	Name	Owner	Publish date
454	Infection of other or unspecified genitourinary system	ieuan.scanlon	2021-10-06	currently shown

Code	Description	Disease	Category
A18.1	Tuberculosis of genitourinary system	Infection of other or unspecified genitourinary system	Possible diagnosis of Infection of other or unspecified genitourinary system
A51.0	Primary genital syphilis	Infection of other or unspecified genitourinary system	Possible diagnosis of Infection of other or unspecified genitourinary system
A54.0	Gonococcal infection of lower genitourinary tract without periurethral or accessory gland abscess	Infection of other or unspecified genitourinary system	Possible diagnosis of Infection of other or unspecified genitourinary system
A54.1	Gonococcal infection of lower genitourinary tract with periurethral and accessory gland abscess	Infection of other or unspecified genitourinary system	Possible diagnosis of Infection of other or unspecified genitourinary system
A54.2	Gonococcal pelviperitonitis and other gonococcal genitourinary infections	Infection of other or unspecified genitourinary system	Possible diagnosis of Infection of other or unspecified genitourinary system
A56.0	Chlamydial infection of lower genitourinary tract	Infection of other or unspecified genitourinary system	Possible diagnosis of Infection of other or unspecified genitourinary system
A56.1	Chlamydial infection of pelviperitoneum and other genitourinary organs	Infection of other or unspecified genitourinary system	Possible diagnosis of Infection of other or unspecified genitourinary system
A56.2	Chlamydial infection of genitourinary tract, unspecified	Infection of other or unspecified genitourinary system	Possible diagnosis of Infection of other or unspecified genitourinary system
A57	Chancroid	Infection of other or unspecified genitourinary system	Possible diagnosis of Infection of other or unspecified genitourinary system
A58	Granuloma inguinale	Infection of other or unspecified genitourinary system	Possible diagnosis of Infection of other or unspecified genitourinary system
A59.0	Urogenital trichomoniasis	Infection of other or unspecified genitourinary system	Possible diagnosis of Infection of other or unspecified genitourinary system
A60.0	Herpesviral infection of genitalia and urogenital tract	Infection of other or unspecified genitourinary system	Possible diagnosis of Infection of other or unspecified genitourinary system
B37.3	Candidiasis of vulva and vagina	Infection of other or unspecified genitourinary system	Diagnosis of Infection of other or unspecified genitourinary system
B37.4	Candidiasis of other urogenital sites	Infection of other or unspecified genitourinary system	Possible diagnosis of Infection of other or unspecified genitourinary system
B90.1	Sequelae of genitourinary tuberculosis	Infection of other or unspecified genitourinary system	Possible diagnosis of Infection of other or unspecified genitourinary system
N75.1	Abscess of Bartholin's gland	Infection of other or unspecified genitourinary system	Diagnosis of Infection of other or unspecified genitourinary system
N77.0	Ulceration of vulva in infectious and parasitic diseases classified elsewhere	Infection of other or unspecified genitourinary system	Diagnosis of Infection of other or unspecified genitourinary system
N77.1	Vaginitis, vulvitis and vulvovaginitis in infectious and parasitic diseases classified elsewhere	Infection of other or unspecified genitourinary system	Diagnosis of Infection of other or unspecified genitourinary system