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Other nervous system infections

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

Type
Disease or Syndrome
ID
PH229
Version ID
458
Valid event data range
01/01/1999 - 01/07/2016
Sex
Female, Male
Agreement Date
2019-05-20
Coding system
ICD10 codes
Tags /Collections
CALIBER Phenotype Library

Definition

At the specified date, a patient is defined as having had Other nervous system infections IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Secondary care

  1. ALL diagnoses of Other nervous system infections or history of diagnosis during a hospitalization OR

  2. ALL possible diagnosis of Other nervous system infections during a hospitalization IF NO record satisfying criteria for Meningitis or Encephalitis 30 days before or 30 days after the first event date for Other nervous system infections.

Implementation


Publications

  • Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

Rows: 30
Code Description Disease Category
A06.6 Amoebic brain abscess Other nervous system infections Diagnosis of Other nervous system infections
A17.8 Other tuberculosis of nervous system Other nervous system infections Diagnosis of Other nervous system infections
A17.9 Tuberculosis of nervous system, unspecified Other nervous system infections Diagnosis of Other nervous system infections
A52.1 Symptomatic neurosyphilis Other nervous system infections Diagnosis of Other nervous system infections
A52.2 Asymptomatic neurosyphilis Other nervous system infections Diagnosis of Other nervous system infections
A52.3 Neurosyphilis, unspecified Other nervous system infections Diagnosis of Other nervous system infections
A80 Acute poliomyelitis Other nervous system infections Diagnosis of Other nervous system infections
A81 Atypical virus infections of central nervous system Other nervous system infections Diagnosis of Other nervous system infections
A82 Rabies Other nervous system infections Diagnosis of Other nervous system infections
A88 Other viral infections of central nervous system, not elsewhere classified Other nervous system infections Diagnosis of Other nervous system infections
A89 Unspecified viral infection of central nervous system Other nervous system infections Diagnosis of Other nervous system infections
B02.2 Zoster with other nervous system involvement Other nervous system infections Diagnosis of Other nervous system infections
B06.0 Rubella with neurological complications Other nervous system infections Diagnosis of Other nervous system infections
B43.1 Phaeomycotic brain abscess Other nervous system infections Diagnosis of Other nervous system infections
B45.1 Cerebral cryptococcosis Other nervous system infections Diagnosis of Other nervous system infections
B50.0 Plasmodium falciparum malaria with cerebral complications Other nervous system infections Diagnosis of Other nervous system infections
B58.2 Toxoplasma meningoencephalitis Other nervous system infections Diagnosis of Other nervous system infections
B69.0 Cysticercosis of central nervous system Other nervous system infections Diagnosis of Other nervous system infections
B90.0 Sequelae of central nervous system tuberculosis Other nervous system infections Diagnosis of Other nervous system infections
B91 Sequelae of poliomyelitis Other nervous system infections Diagnosis of Other nervous system infections
G04.2 Bacterial meningoencephalitis and meningomyelitis, not elsewhere classified Other nervous system infections Possible diagnosis of Other nervous system infections
G04.8 Other encephalitis, myelitis and encephalomyelitis Other nervous system infections Possible diagnosis of Other nervous system infections
G04.9 Encephalitis, myelitis and encephalomyelitis, unspecified Other nervous system infections Possible diagnosis of Other nervous system infections
G05.0 Encephalitis, myelitis and encephalomyelitis in bacterial diseases classified elsewhere Other nervous system infections Possible diagnosis of Other nervous system infections
G05.1 Encephalitis, myelitis and encephalomyelitis in viral diseases classified elsewhere Other nervous system infections Possible diagnosis of Other nervous system infections
G05.2 Encephalitis, myelitis and encephalomyelitis in other infectious and parasitic diseases classified elsewhere Other nervous system infections Possible diagnosis of Other nervous system infections
G06 Intracranial and intraspinal abscess and granuloma Other nervous system infections Diagnosis of Other nervous system infections
G07 Intracranial and intraspinal abscess and granuloma in diseases classified elsewhere Other nervous system infections Diagnosis of Other nervous system infections
G08 Intracranial and intraspinal phlebitis and thrombophlebitis Other nervous system infections Diagnosis of Other nervous system infections
M89.6 Osteopathy after poliomyelitis Other nervous system infections Diagnosis of Other nervous system infections

API

To Export Phenotype Details:

Format API
XML site_root/api/v1/public/phenotypes/PH229/version/458/detail/?format=xml
JSON site_root/api/v1/public/phenotypes/PH229/version/458/detail/?format=json
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get details of phenotype

details = get_phenotype_detail_by_version('PH229', '458', api_client=client)

To Export Phenotype Code List:

Format API
XML site_root/api/v1/public/phenotypes/PH229/version/458/export/codes/?format=xml
JSON site_root/api/v1/public/phenotypes/PH229/version/458/export/codes/?format=json
CSV site_root/phenotypes/PH229/version/458/export/codes/
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get codelists of phenotype

codelists = get_phenotype_code_list('PH229', '458', api_client=client)

Version History

Version
ID
Name Owner Publish date
458 Other nervous system infections ieuan.scanlon 2021-10-06 currently shown

Export - export all codes into a csv file/JSON/XML for the current phenotype version.

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