Phenotype Library | phenotype: Other nervous system infections

Other nervous system infections

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

PH229

Version ID

458

Type

Disease or Syndrome

Data Sources

HES Admitted Patient Care data for CPRD GOLD

Valid event data range

01/01/1999 - 01/07/2016

Sex

♀ Female ♂ Male

Agreement Date

2019-05-20

Coding system

ICD10 codes

Collections

CALIBER Phenotype Library

Definition

At the specified date, a patient is defined as having had Other nervous system infections IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Secondary care

ALL diagnoses of Other nervous system infections or history of diagnosis during a hospitalization OR
ALL possible diagnosis of Other nervous system infections during a hospitalization IF NO record satisfying criteria for Meningitis or Encephalitis 30 days before or 30 days after the first event date for Other nervous system infections.

Implementation

PhenoFlow Implementation:

https://kclhi.org/phenoflow/phenotype/download/664

Publications

Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

CSV

JSON

XML

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C1336/3811 Other nervous system infections - Secondary care - Diagnoses - ICD10 codes

Rows: 30

API

To Export Phenotype Details:

Format	API
XML	site_root/api/v1/public/phenotypes/PH229/version/458/detail/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH229/version/458/detail/?format=json
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get details of phenotype details = get_phenotype_detail_by_version('PH229', '458', api_client=client)`

To Export Phenotype Code List:

Format	API
XML	site_root/api/v1/public/phenotypes/PH229/version/458/export/codes/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH229/version/458/export/codes/?format=json
CSV	site_root/phenotypes/PH229/version/458/export/codes/
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get codelists of phenotype codelists = get_phenotype_code_list('PH229', '458', api_client=client)`

Version History

Version ID	Name	Owner	Publish date
458	Other nervous system infections	ieuan.scanlon	2021-10-06	currently shown

Code	Description	Disease	Category
A06.6	Amoebic brain abscess	Other nervous system infections	Diagnosis of Other nervous system infections
A17.8	Other tuberculosis of nervous system	Other nervous system infections	Diagnosis of Other nervous system infections
A17.9	Tuberculosis of nervous system, unspecified	Other nervous system infections	Diagnosis of Other nervous system infections
A52.1	Symptomatic neurosyphilis	Other nervous system infections	Diagnosis of Other nervous system infections
A52.2	Asymptomatic neurosyphilis	Other nervous system infections	Diagnosis of Other nervous system infections
A52.3	Neurosyphilis, unspecified	Other nervous system infections	Diagnosis of Other nervous system infections
A80	Acute poliomyelitis	Other nervous system infections	Diagnosis of Other nervous system infections
A81	Atypical virus infections of central nervous system	Other nervous system infections	Diagnosis of Other nervous system infections
A82	Rabies	Other nervous system infections	Diagnosis of Other nervous system infections
A88	Other viral infections of central nervous system, not elsewhere classified	Other nervous system infections	Diagnosis of Other nervous system infections
A89	Unspecified viral infection of central nervous system	Other nervous system infections	Diagnosis of Other nervous system infections
B02.2	Zoster with other nervous system involvement	Other nervous system infections	Diagnosis of Other nervous system infections
B06.0	Rubella with neurological complications	Other nervous system infections	Diagnosis of Other nervous system infections
B43.1	Phaeomycotic brain abscess	Other nervous system infections	Diagnosis of Other nervous system infections
B45.1	Cerebral cryptococcosis	Other nervous system infections	Diagnosis of Other nervous system infections
B50.0	Plasmodium falciparum malaria with cerebral complications	Other nervous system infections	Diagnosis of Other nervous system infections
B58.2	Toxoplasma meningoencephalitis	Other nervous system infections	Diagnosis of Other nervous system infections
B69.0	Cysticercosis of central nervous system	Other nervous system infections	Diagnosis of Other nervous system infections
B90.0	Sequelae of central nervous system tuberculosis	Other nervous system infections	Diagnosis of Other nervous system infections
B91	Sequelae of poliomyelitis	Other nervous system infections	Diagnosis of Other nervous system infections
G04.2	Bacterial meningoencephalitis and meningomyelitis, not elsewhere classified	Other nervous system infections	Possible diagnosis of Other nervous system infections
G04.8	Other encephalitis, myelitis and encephalomyelitis	Other nervous system infections	Possible diagnosis of Other nervous system infections
G04.9	Encephalitis, myelitis and encephalomyelitis, unspecified	Other nervous system infections	Possible diagnosis of Other nervous system infections
G05.0	Encephalitis, myelitis and encephalomyelitis in bacterial diseases classified elsewhere	Other nervous system infections	Possible diagnosis of Other nervous system infections
G05.1	Encephalitis, myelitis and encephalomyelitis in viral diseases classified elsewhere	Other nervous system infections	Possible diagnosis of Other nervous system infections
G05.2	Encephalitis, myelitis and encephalomyelitis in other infectious and parasitic diseases classified elsewhere	Other nervous system infections	Possible diagnosis of Other nervous system infections
G06	Intracranial and intraspinal abscess and granuloma	Other nervous system infections	Diagnosis of Other nervous system infections
G07	Intracranial and intraspinal abscess and granuloma in diseases classified elsewhere	Other nervous system infections	Diagnosis of Other nervous system infections
G08	Intracranial and intraspinal phlebitis and thrombophlebitis	Other nervous system infections	Diagnosis of Other nervous system infections
M89.6	Osteopathy after poliomyelitis	Other nervous system infections	Diagnosis of Other nervous system infections