Other or unspecified infectious organisms
Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A
PH230 / 460 Clinical-Coded Phenotype
Overview
Phenotype TypeDisease or syndromeSexBothValid Event Date Range01/01/1999 - 01/07/2016Coding SystemICD10 codesData SourcesCollectionsCALIBERPhenotype LibraryTagsNo dataDefinition
At the specified date, a patient is defined as having had Diseases caused by Other or unspecified infectious organisms IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Secondary care
ALL diagnoses of Diseases caused by Other or unspecified infectious organisms or history of diagnosis during a hospitalization OR
ALL possible diagnosis of Diseases caused by Other or unspecified infectious organisms during a hospitalization IF NO record satisfying criteria for Bacterial Diseases, Tuberculosis, Viral diseases, Chronic viral Hepatitis, HIV, Mycoses or Parasitic Infections 30 days before or 30 days after the first event date for Diseases caused by Other or unspecified infectious organisms.
Implementation
Phenoflow IDImplementation
Clinical Code List
PUBLISHED - 91 Codes
Publication
Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3
(DOI:10.1016/S2589-7500(19)30012-3)
Citation Example
Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A. PH230 / 460 - Other or unspecified infectious organisms. Phenotype Library [Online]. 06 October 2021. Available from: http://phenotypes.healthdatagateway.org/phenotypes/PH230/version/460/detail/. [Accessed 11 November 2024]
API
To Export Phenotype Details:
Format API JSON site_root/api/v1/phenotypes/PH230/version/460/detail/?format=json R Package library(ConceptLibraryClient)
# Connect to API
client = ConceptLibraryClient::Connection$new(public=TRUE)
# Get details of phenotype
phenotype_details = client$phenotypes$get_detail(
'PH230',
version_id=460
)Py Package from pyconceptlibraryclient import Client
# Connect to API
client = Client(public=True)
# Get codelist of phenotype
phenotype_codelist = client.phenotypes.get_detail(
'PH230',
version_id=460
)To Export Phenotype Code List:
Format API JSON site_root/api/v1/phenotypes/PH230/version/460/export/codes/?format=json CSV site_root/phenotypes/PH230/version/460/export/codes/ R Package library(ConceptLibraryClient)
# Connect to API
client = ConceptLibraryClient::Connection$new(public=TRUE)
# Get codelist of phenotype
phenotype_codelist = client$phenotypes$get_codelist(
'PH230',
version_id=460
)Py Package from pyconceptlibraryclient import Client
# Connect to API
client = Client(public=True)
# Get codelist of phenotype
phenotype_codelist = client.phenotypes.get_codelist(
'PH230',
version_id=460
)Version History