Other or unspecified infectious organisms

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

PH230 / 460 Clinical-Coded Phenotype

  1. Overview

    Phenotype Type
    Disease or syndrome
    Sex
    Both
    Valid Event Date Range
    01/01/1999 - 01/07/2016
    Coding System
    ICD10 codes
    Collections
    CALIBERPhenotype Library
    Tags
    No data
  2. Definition

    At the specified date, a patient is defined as having had Diseases caused by Other or unspecified infectious organisms IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

    Secondary care

    1. ALL diagnoses of Diseases caused by Other or unspecified infectious organisms or history of diagnosis during a hospitalization OR

    2. ALL possible diagnosis of Diseases caused by Other or unspecified infectious organisms during a hospitalization IF NO record satisfying criteria for Bacterial Diseases, Tuberculosis, Viral diseases, Chronic viral Hepatitis, HIV, Mycoses or Parasitic Infections 30 days before or 30 days after the first event date for Diseases caused by Other or unspecified infectious organisms.

  3. Implementation

  4. Clinical Code List

  5. Publication

    • Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

      (DOI:10.1016/S2589-7500(19)30012-3)

    Citation Example

    Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A. PH230 / 460 - Other or unspecified infectious organisms. Phenotype Library [Online]. 06 October 2021. Available from: http://phenotypes.healthdatagateway.org/phenotypes/PH230/version/460/detail/. [Accessed 15 June 2024]

  6. API

    To Export Phenotype Details:

    FormatAPI
    JSON site_root/api/v1/phenotypes/PH230/version/460/detail/?format=json
    R Package

    # Download here

    library(ConceptLibraryClient)


    # Connect to API

    client = ConceptLibraryClient::Connection$new(public=TRUE)


    # Get details of phenotype

    phenotype_details = client$phenotypes$get_detail(
     'PH230',
     version_id=460
    )

    Py Package

    # Download here

    from pyconceptlibraryclient import Client


    # Connect to API

    client = Client(public=True)


    # Get codelist of phenotype

    phenotype_codelist = client.phenotypes.get_detail(
     'PH230',
     version_id=460
    )

    To Export Phenotype Code List:

    FormatAPI
    JSON site_root/api/v1/phenotypes/PH230/version/460/export/codes/?format=json
    CSV site_root/phenotypes/PH230/version/460/export/codes/
    R Package

    # Download here

    library(ConceptLibraryClient)


    # Connect to API

    client = ConceptLibraryClient::Connection$new(public=TRUE)


    # Get codelist of phenotype

    phenotype_codelist = client$phenotypes$get_codelist(
     'PH230',
     version_id=460
    )

    Py Package

    # Download here

    from pyconceptlibraryclient import Client


    # Connect to API

    client = Client(public=True)


    # Get codelist of phenotype

    phenotype_codelist = client.phenotypes.get_codelist(
     'PH230',
     version_id=460
    )

  7. Version History

    Version IDNameOwnerPublish date
    460 Other or unspecified infectious organisms ieuan.scanlon2021-10-06currently shown