Infections of Other or unspecified organs
Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A
PH231 / 462 Clinical-Coded Phenotype
Overview
Phenotype TypeDisease or syndromeSexBothValid Event Date Range01/01/1999 - 01/07/2016Coding SystemICD10 codesData SourcesCollectionsCALIBERPhenotype LibraryTagsNo dataDefinition
At the specified date, a patient is defined as having had Infections of Other or unspecified organs IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Secondary care
ALL diagnoses of Infections of Other or unspecified organs or history of diagnosis during a hospitalization OR
ALL possible diagnosis of Infections of Other or unspecified organs during a hospitalization IF NO record satisfying criteria for the following conditions 30 days before or 30 days after the first event date for Infections of Other or unspecified organs:
a) Infections of the digestive system b) Infection of anal and rectal regions c) Septicaemia d) Meningitis e) Encephalitis f) Other nervous system infections g) Eye infections h) Ear and Upper Respiratory Tract Infections i) Lower Respiratory Tract Infections j) Infections of the Heart k) Infection of skin and subcutaneous tissues l) Infection of liver m) Infection of bones and joints n) Urinary Tract Infections o) Infection of male genital system p) Female Pelvic Inflammatory Disease q) Infection of other or unspecified genitourinary system
Implementation
Phenoflow ID
No dataImplementation
Clinical Code List
PUBLISHED - 223 Codes
Publication
Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3
(DOI:10.1016/S2589-7500(19)30012-3)
Citation Example
Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A. PH231 / 462 - Infections of Other or unspecified organs. Phenotype Library [Online]. 06 October 2021. Available from: http://phenotypes.healthdatagateway.org/phenotypes/PH231/version/462/detail/. [Accessed 07 October 2024]
API
To Export Phenotype Details:
Format API JSON site_root/api/v1/phenotypes/PH231/version/462/detail/?format=json R Package library(ConceptLibraryClient)
# Connect to API
client = ConceptLibraryClient::Connection$new(public=TRUE)
# Get details of phenotype
phenotype_details = client$phenotypes$get_detail(
'PH231',
version_id=462
)Py Package from pyconceptlibraryclient import Client
# Connect to API
client = Client(public=True)
# Get codelist of phenotype
phenotype_codelist = client.phenotypes.get_detail(
'PH231',
version_id=462
)To Export Phenotype Code List:
Format API JSON site_root/api/v1/phenotypes/PH231/version/462/export/codes/?format=json CSV site_root/phenotypes/PH231/version/462/export/codes/ R Package library(ConceptLibraryClient)
# Connect to API
client = ConceptLibraryClient::Connection$new(public=TRUE)
# Get codelist of phenotype
phenotype_codelist = client$phenotypes$get_codelist(
'PH231',
version_id=462
)Py Package from pyconceptlibraryclient import Client
# Connect to API
client = Client(public=True)
# Get codelist of phenotype
phenotype_codelist = client.phenotypes.get_codelist(
'PH231',
version_id=462
)Version History