Infections of Other or unspecified organs

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

PH231 / 462 Clinical-Coded Phenotype

  1. Overview

    Phenotype Type
    Disease or syndrome
    Phenotype UUID
    7YqX9Fgz3M2D6uCKXu7B4q
    Sex
    Both
    Valid Event Date Range
    01/01/1999 - 01/07/2016
    Coding System
    ICD10 codes
    Collections
    CALIBERPhenotype Library
    Tags
    No data
  2. Definition

    At the specified date, a patient is defined as having had Infections of Other or unspecified organs IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

    Secondary care

    1. ALL diagnoses of Infections of Other or unspecified organs or history of diagnosis during a hospitalization OR

    2. ALL possible diagnosis of Infections of Other or unspecified organs during a hospitalization IF NO record satisfying criteria for the following conditions 30 days before or 30 days after the first event date for Infections of Other or unspecified organs:

    a) Infections of the digestive system b) Infection of anal and rectal regions c) Septicaemia d) Meningitis e) Encephalitis f) Other nervous system infections g) Eye infections h) Ear and Upper Respiratory Tract Infections i) Lower Respiratory Tract Infections j) Infections of the Heart k) Infection of skin and subcutaneous tissues l) Infection of liver m) Infection of bones and joints n) Urinary Tract Infections o) Infection of male genital system p) Female Pelvic Inflammatory Disease q) Infection of other or unspecified genitourinary system

  3. Implementation

  4. Clinical Code List

  5. Publication

    • Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

      (DOI:10.1016/S2589-7500(19)30012-3)

    Citation Example

    Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A. PH231 / 462 - Infections of Other or unspecified organs. Phenotype Library [Online]. 06 October 2021. Available from: http://phenotypes.healthdatagateway.org/phenotypes/PH231/version/462/detail/. [Accessed 22 July 2024]

  6. API

    To Export Phenotype Details:

    FormatAPI
    JSON site_root/api/v1/phenotypes/PH231/version/462/detail/?format=json
    R Package

    # Download here

    library(ConceptLibraryClient)


    # Connect to API

    client = ConceptLibraryClient::Connection$new(public=TRUE)


    # Get details of phenotype

    phenotype_details = client$phenotypes$get_detail(
     'PH231',
     version_id=462
    )

    Py Package

    # Download here

    from pyconceptlibraryclient import Client


    # Connect to API

    client = Client(public=True)


    # Get codelist of phenotype

    phenotype_codelist = client.phenotypes.get_detail(
     'PH231',
     version_id=462
    )

    To Export Phenotype Code List:

    FormatAPI
    JSON site_root/api/v1/phenotypes/PH231/version/462/export/codes/?format=json
    CSV site_root/phenotypes/PH231/version/462/export/codes/
    R Package

    # Download here

    library(ConceptLibraryClient)


    # Connect to API

    client = ConceptLibraryClient::Connection$new(public=TRUE)


    # Get codelist of phenotype

    phenotype_codelist = client$phenotypes$get_codelist(
     'PH231',
     version_id=462
    )

    Py Package

    # Download here

    from pyconceptlibraryclient import Client


    # Connect to API

    client = Client(public=True)


    # Get codelist of phenotype

    phenotype_codelist = client.phenotypes.get_codelist(
     'PH231',
     version_id=462
    )

  7. Version History

    Version IDNameOwnerPublish date
    462 Infections of Other or unspecified organs ieuan.scanlon2021-10-06currently shown