Phenotypes > Pancreatitis

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Pancreatitis

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

ID
PH232
Version ID
464
Type
Disease or Syndrome
Data Sources
CPRD GOLD , HES Admitted Patient Care data for CPRD GOLD
Valid event data range
01/01/1999 - 01/07/2016
Sex
♀  Female ♂  Male
Agreement Date
2019-05-20
Coding system
Read codes v2 ICD10 codes Med codes
Collections
CALIBER Phenotype Library
Tags
No tags

Definition

At the specified date, a patient is defined as having had 'Pancreatitis' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Primary care

  1. 'Pancreatitis' diagnosis or history of diagnosis or procedure during a consultation

OR Secondary care

  1. ALL diagnoses of 'Pancreatitis' or history of diagnosis during a hospitalization

Implementation


https://kclhi.org/phenoflow/phenotype/download/673

Publications

  • Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

Expand All  /  Collapse All
Rows: 24
Code Description Disease Medcode Category
14CG.00 History of acute pancreatitis Pancreatitis 32954.0 History of Pancreatitis
14CH.00 History of chronic pancreatitis Pancreatitis 71633.0 History of Pancreatitis
A723.00 Mumps pancreatitis Pancreatitis 18544.0 Diagnosis of Pancreatitis
A785100 Cytomegaloviral pancreatitis Pancreatitis 44278.0 Diagnosis of Pancreatitis
D201612 Pancytopenia with pancreatitis Pancreatitis 61326.0 Diagnosis of Pancreatitis
J670.00 Acute pancreatitis Pancreatitis 1113.0 Diagnosis of Pancreatitis
J670000 Acute pancreatitis unspecified Pancreatitis 49499.0 Diagnosis of Pancreatitis
J670100 Acute recurrent pancreatitis Pancreatitis 1506.0 Diagnosis of Pancreatitis
J670200 Acute haemorrhagic pancreatitis Pancreatitis 31395.0 Diagnosis of Pancreatitis
J670300 Acute suppurative pancreatitis Pancreatitis 44571.0 Diagnosis of Pancreatitis
J670400 Subacute pancreatitis Pancreatitis 48685.0 Diagnosis of Pancreatitis
J670500 Gallstone acute pancreatitis Pancreatitis 12316.0 Diagnosis of Pancreatitis
J670600 Idiopathic acute pancreatitis Pancreatitis 105194.0 Diagnosis of Pancreatitis
J670700 Biliary acute pancreatitis Pancreatitis 104385.0 Diagnosis of Pancreatitis
J670800 Alcohol-induced acute pancreatitis Pancreatitis 104611.0 Diagnosis of Pancreatitis
J670900 Drug-induced acute pancreatitis Pancreatitis 105910.0 Diagnosis of Pancreatitis
J670y00 Other acute pancreatitis Pancreatitis 105066.0 Diagnosis of Pancreatitis
J670z00 Acute pancreatitis NOS Pancreatitis 14905.0 Diagnosis of Pancreatitis
J670z11 Pancreatitis Pancreatitis 656.0 Diagnosis of Pancreatitis
J671.00 Chronic pancreatitis Pancreatitis 1419.0 Diagnosis of Pancreatitis
J671000 Alcohol-induced chronic pancreatitis Pancreatitis 24984.0 Diagnosis of Pancreatitis
J671100 Gallstone chronic pancreatitis Pancreatitis 42278.0 Diagnosis of Pancreatitis
J672100 Pseudocyst of pancreas Pancreatitis 4650.0 Diagnosis of Pancreatitis
Jyu8400 [X]Other chronic pancreatitis Pancreatitis 49353.0 Diagnosis of Pancreatitis
Rows: 24
Code Description Disease ReadcodeDescr Readcode
104385.0 Diagnosis of Pancreatitis Pancreatitis Biliary acute pancreatitis J670700
104611.0 Diagnosis of Pancreatitis Pancreatitis Alcohol-induced acute pancreatitis J670800
105066.0 Diagnosis of Pancreatitis Pancreatitis Other acute pancreatitis J670y00
105194.0 Diagnosis of Pancreatitis Pancreatitis Idiopathic acute pancreatitis J670600
105910.0 Diagnosis of Pancreatitis Pancreatitis Drug-induced acute pancreatitis J670900
1113.0 Diagnosis of Pancreatitis Pancreatitis Acute pancreatitis J670.00
12316.0 Diagnosis of Pancreatitis Pancreatitis Gallstone acute pancreatitis J670500
1419.0 Diagnosis of Pancreatitis Pancreatitis Chronic pancreatitis J671.00
14905.0 Diagnosis of Pancreatitis Pancreatitis Acute pancreatitis NOS J670z00
1506.0 Diagnosis of Pancreatitis Pancreatitis Acute recurrent pancreatitis J670100
18544.0 Diagnosis of Pancreatitis Pancreatitis Mumps pancreatitis A723.00
24984.0 Diagnosis of Pancreatitis Pancreatitis Alcohol-induced chronic pancreatitis J671000
31395.0 Diagnosis of Pancreatitis Pancreatitis Acute haemorrhagic pancreatitis J670200
32954.0 History of Pancreatitis Pancreatitis History of acute pancreatitis 14CG.00
42278.0 Diagnosis of Pancreatitis Pancreatitis Gallstone chronic pancreatitis J671100
44278.0 Diagnosis of Pancreatitis Pancreatitis Cytomegaloviral pancreatitis A785100
44571.0 Diagnosis of Pancreatitis Pancreatitis Acute suppurative pancreatitis J670300
4650.0 Diagnosis of Pancreatitis Pancreatitis Pseudocyst of pancreas J672100
48685.0 Diagnosis of Pancreatitis Pancreatitis Subacute pancreatitis J670400
49353.0 Diagnosis of Pancreatitis Pancreatitis [X]Other chronic pancreatitis Jyu8400
49499.0 Diagnosis of Pancreatitis Pancreatitis Acute pancreatitis unspecified J670000
61326.0 Diagnosis of Pancreatitis Pancreatitis Pancytopenia with pancreatitis D201612
656.0 Diagnosis of Pancreatitis Pancreatitis Pancreatitis J670z11
71633.0 History of Pancreatitis Pancreatitis History of chronic pancreatitis 14CH.00
Rows: 4
Code Description Disease Category
K85 Acute pancreatitis Pancreatitis Diagnosis of Pancreatitis
K86.0 Alcohol-induced chronic pancreatitis Pancreatitis Diagnosis of Pancreatitis
K86.1 Other chronic pancreatitis Pancreatitis Diagnosis of Pancreatitis
K86.3 Pseudocyst of pancreas Pancreatitis Diagnosis of Pancreatitis

API

To Export Phenotype Details:

Format API
XML site_root/api/v1/public/phenotypes/PH232/version/464/detail/?format=xml
JSON site_root/api/v1/public/phenotypes/PH232/version/464/detail/?format=json
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get details of phenotype

details = get_phenotype_detail_by_version('PH232', '464', api_client=client)

To Export Phenotype Code List:

Format API
XML site_root/api/v1/public/phenotypes/PH232/version/464/export/codes/?format=xml
JSON site_root/api/v1/public/phenotypes/PH232/version/464/export/codes/?format=json
CSV site_root/phenotypes/PH232/version/464/export/codes/
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get codelists of phenotype

codelists = get_phenotype_code_list('PH232', '464', api_client=client)

Version History

Version
ID		 Name Owner Publish date
464 Pancreatitis ieuan.scanlon 2021-10-06 currently shown

Export - export all codes into a csv file/JSON/XML for the current phenotype version.

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