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Parasitic infections

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

Type
Disease or Syndrome
ID
PH233
Version ID
466
Valid event data range
01/01/1999 - 01/07/2016
Sex
Female, Male
Agreement Date
2019-05-20
Coding system
ICD10 codes
Tags /Collections
CALIBER Phenotype Library

Definition

At the specified date, a patient is defined as having had 'Parasitic infections' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Secondary care

  1. ALL diagnoses of 'Parasitic infections' or history of diagnosis during a hospitalization

Implementation


Publications

  • Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

Rows: 41
Code Description Disease Category
A06 Amoebiasis Parasitic infections Diagnosis of Parasitic infections
A07 Other protozoal intestinal diseases Parasitic infections Diagnosis of Parasitic infections
A59 Trichomoniasis Parasitic infections Diagnosis of Parasitic infections
B50 Plasmodium falciparum malaria Parasitic infections Diagnosis of Parasitic infections
B51 Plasmodium vivax malaria Parasitic infections Diagnosis of Parasitic infections
B52 Plasmodium malariae malaria Parasitic infections Diagnosis of Parasitic infections
B53 Other parasitologically confirmed malaria Parasitic infections Diagnosis of Parasitic infections
B54 Unspecified malaria Parasitic infections Diagnosis of Parasitic infections
B55 Leishmaniasis Parasitic infections Diagnosis of Parasitic infections
B56 African trypanosomiasis Parasitic infections Diagnosis of Parasitic infections
B57 Chagas' disease Parasitic infections Diagnosis of Parasitic infections
B58 Toxoplasmosis Parasitic infections Diagnosis of Parasitic infections
B60 Other protozoal diseases, not elsewhere classified Parasitic infections Diagnosis of Parasitic infections
B64 Unspecified protozoal disease Parasitic infections Diagnosis of Parasitic infections
B65 Schistosomiasis [bilharziasis] Parasitic infections Diagnosis of Parasitic infections
B66 Other fluke infections Parasitic infections Diagnosis of Parasitic infections
B67 Echinococcosis Parasitic infections Diagnosis of Parasitic infections
B68 Taeniasis Parasitic infections Diagnosis of Parasitic infections
B69 Cysticercosis Parasitic infections Diagnosis of Parasitic infections
B70 Diphyllobothriasis and sparganosis Parasitic infections Diagnosis of Parasitic infections
B71 Other cestode infections Parasitic infections Diagnosis of Parasitic infections
B72 Dracunculiasis Parasitic infections Diagnosis of Parasitic infections
B73 Onchocerciasis Parasitic infections Diagnosis of Parasitic infections
B74 Filariasis Parasitic infections Diagnosis of Parasitic infections
B75 Trichinellosis Parasitic infections Diagnosis of Parasitic infections
B76 Hookworm diseases Parasitic infections Diagnosis of Parasitic infections
B77 Ascariasis Parasitic infections Diagnosis of Parasitic infections
B78 Strongyloidiasis Parasitic infections Diagnosis of Parasitic infections
B79 Trichuriasis Parasitic infections Diagnosis of Parasitic infections
B80 Enterobiasis Parasitic infections Diagnosis of Parasitic infections
B81 Other intestinal helminthiases, not elsewhere classified Parasitic infections Diagnosis of Parasitic infections
B82 Unspecified intestinal parasitism Parasitic infections Diagnosis of Parasitic infections
B83 Other helminthiases Parasitic infections Diagnosis of Parasitic infections
B85 Pediculosis and phthiriasis Parasitic infections Diagnosis of Parasitic infections
B86 Scabies Parasitic infections Diagnosis of Parasitic infections
B87 Myiasis Parasitic infections Diagnosis of Parasitic infections
B88 Other infestations Parasitic infections Diagnosis of Parasitic infections
B89 Unspecified parasitic disease Parasitic infections Diagnosis of Parasitic infections
J17.3 Pneumonia in parasitic diseases Parasitic infections Diagnosis of Parasitic infections
K23.1 Megaoesophagus in Chagas' disease Parasitic infections Diagnosis of Parasitic infections
P37.1 Congenital toxoplasmosis Parasitic infections Diagnosis of Parasitic infections

API

To Export Phenotype Details:

Format API
XML site_root/api/v1/public/phenotypes/PH233/version/466/detail/?format=xml
JSON site_root/api/v1/public/phenotypes/PH233/version/466/detail/?format=json
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get details of phenotype

details = get_phenotype_detail_by_version('PH233', '466', api_client=client)

To Export Phenotype Code List:

Format API
XML site_root/api/v1/public/phenotypes/PH233/version/466/export/codes/?format=xml
JSON site_root/api/v1/public/phenotypes/PH233/version/466/export/codes/?format=json
CSV site_root/phenotypes/PH233/version/466/export/codes/
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get codelists of phenotype

codelists = get_phenotype_code_list('PH233', '466', api_client=client)

Version History

Version
ID
Name Owner Publish date
466 Parasitic infections ieuan.scanlon 2021-10-06 currently shown

Export - export all codes into a csv file/JSON/XML for the current phenotype version.

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