Peripheral arterial disease
Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A
PH236 / 472 Clinical-Coded Phenotype
Overview
Phenotype TypeDisease or syndromeSexBothValid Event Date Range01/01/1999 - 01/07/2016Coding SystemICD10 codesRead codes v2OPCS4 codesMed codesData SourcesCollectionsCALIBERPhenotype LibraryTagsNo dataDefinition
Use MODIFIED CALIBER 'Peripheral arterial disease' (PAD) phenotyping algorithm:
At the specified date, a patient is considered to have 'Peripheral arterial disease' IF they meet any of the criteria below on or before the specified date.
The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
Peripheral vascular disease diagnosis during a consultation. arterial_gprd: category 7
Record of history of PVD during a consultation. The following Read codes from CPRD:
Read:14F7.00 Medcode: 106762 Descr:H/O: arterial lower limb ulcer
Read:14NB.00 Medcode: 59534 Descr: H/O: Peripheral vascular disease procedure
Leg or aortic embolism or thrombosis diagnosis during a consultation. arterial_gprd: category 8
'Peripheral arterial disease' procedures, excluding repair of AAA recording during a consultation. pad_opcs_gprd: category 3
Abnormal 'Peripheral arterial disease' (PAD) ultrasound or Doppler study results recorded during a consultation. As per implementation of pad_ud_gprd in CALIBER
Abnormal 'Peripheral arterial disease' angiography results recorded during a consultation. As per implementation of pad_angio_gprd in CALIBER
Secondary care
Primary or secondary diagnosis of Peripheral vascular disease during a hospitalization. arterial_hes: category 7
Primary or secondary diagnosis of leg or aortic embolism or thrombosis during a hospitalization. arterial_hes: category 8
Recording of 'Peripheral arterial disease' procedures, excluding repair of AAA. pad_procs_opcs: category 3
Implementation
Phenoflow IDImplementation
Clinical Code List
PUBLISHED - 201 Codes
PUBLISHED - 201 Codes
PUBLISHED - 6 Codes
PUBLISHED - 71 Codes
Publication
Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3
(DOI:10.1016/S2589-7500(19)30012-3)
Citation Example
Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A. PH236 / 472 - Peripheral arterial disease. Phenotype Library [Online]. 06 October 2021. Available from: http://phenotypes.healthdatagateway.org/phenotypes/PH236/version/472/detail/. [Accessed 31 October 2024]
API
To Export Phenotype Details:
Format API JSON site_root/api/v1/phenotypes/PH236/version/472/detail/?format=json R Package library(ConceptLibraryClient)
# Connect to API
client = ConceptLibraryClient::Connection$new(public=TRUE)
# Get details of phenotype
phenotype_details = client$phenotypes$get_detail(
'PH236',
version_id=472
)Py Package from pyconceptlibraryclient import Client
# Connect to API
client = Client(public=True)
# Get codelist of phenotype
phenotype_codelist = client.phenotypes.get_detail(
'PH236',
version_id=472
)To Export Phenotype Code List:
Format API JSON site_root/api/v1/phenotypes/PH236/version/472/export/codes/?format=json CSV site_root/phenotypes/PH236/version/472/export/codes/ R Package library(ConceptLibraryClient)
# Connect to API
client = ConceptLibraryClient::Connection$new(public=TRUE)
# Get codelist of phenotype
phenotype_codelist = client$phenotypes$get_codelist(
'PH236',
version_id=472
)Py Package from pyconceptlibraryclient import Client
# Connect to API
client = Client(public=True)
# Get codelist of phenotype
phenotype_codelist = client.phenotypes.get_codelist(
'PH236',
version_id=472
)Version History