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Pilonidal cyst/sinus

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

Type
Disease or Syndrome
ID
PH238
Version ID
476
Valid event data range
01/01/1999 - 01/07/2016
Sex
Female, Male
Agreement Date
2019-05-20
Coding system
Read codes v2 ICD10 codes OPCS4 codes Med codes
Tags /Collections
CALIBER Phenotype Library

Definition

At the specified date, a patient is defined as having had 'Pilonidal cyst/sinus' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Primary care

  1. 'Pilonidal cyst/sinus' diagnosis or history of diagnosis during a consultation

OR Secondary care (ICD10)

  1. ALL diagnoses of 'Pilonidal cyst/sinus' or history of diagnosis during a hospitalization OR Secondary care (OPCS4)

  2. ALL procedures for 'Pilonidal cyst/sinus' during a hospitalization

Publications

  • Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

Rows: 20
Code Description Disease Medcode Category
773B.00 Pilonidal sinus operations Pilonidal cyst/sinus 1488.0 Procedure for Pilonidal cyst/sinus
773B000 Excision of pilonidal sinus and Z plasty skin flap HFQ Pilonidal cyst/sinus 57103.0 Procedure for Pilonidal cyst/sinus
773B100 Excision of pilonidal sinus and skin flap NEC Pilonidal cyst/sinus 31272.0 Procedure for Pilonidal cyst/sinus
773B200 Excision of pilonidal sinus and skin graft HFQ Pilonidal cyst/sinus 63149.0 Procedure for Pilonidal cyst/sinus
773B300 Excision of pilonidal sinus and suture HFQ Pilonidal cyst/sinus 33570.0 Procedure for Pilonidal cyst/sinus
773B400 Excision of pilonidal sinus NEC Pilonidal cyst/sinus 1421.0 Procedure for Pilonidal cyst/sinus
773B500 Laying open of track of pilonidal sinus Pilonidal cyst/sinus 28472.0 Procedure for Pilonidal cyst/sinus
773B700 Drainage of pilonidal sinus Pilonidal cyst/sinus 16096.0 Procedure for Pilonidal cyst/sinus
773B800 Injection of radiocontrast substance into pilonidal sinus Pilonidal cyst/sinus 71740.0 Procedure for Pilonidal cyst/sinus
773B900 Destruction of pilonidal sinus NEC Pilonidal cyst/sinus 57629.0 Procedure for Pilonidal cyst/sinus
773BA00 Other specified excision of pilonidal sinus Pilonidal cyst/sinus 61171.0 Procedure for Pilonidal cyst/sinus
773Bx00 Excision of pilonidal sinus NOS Pilonidal cyst/sinus 3773.0 Procedure for Pilonidal cyst/sinus
773By00 Other specified operation on pilonidal sinus Pilonidal cyst/sinus 34294.0 Procedure for Pilonidal cyst/sinus
773Bz00 Operation on pilonidal sinus NOS Pilonidal cyst/sinus 1110.0 Procedure for Pilonidal cyst/sinus
M06..00 Pilonidal sinus/cyst Pilonidal cyst/sinus 5077.0 Diagnosis of Pilonidal cyst/sinus
M060.00 Pilonidal cyst with abscess Pilonidal cyst/sinus 1420.0 Diagnosis of Pilonidal cyst/sinus
M061.00 Pilonidal cyst with no abscess Pilonidal cyst/sinus 33891.0 Diagnosis of Pilonidal cyst/sinus
M062.00 Pilonidal sinus with abscess Pilonidal cyst/sinus 26075.0 Diagnosis of Pilonidal cyst/sinus
M063.00 Pilonidal sinus without abscess Pilonidal cyst/sinus 1109.0 Diagnosis of Pilonidal cyst/sinus
M06z.00 Pilonidal sinus/cyst NOS Pilonidal cyst/sinus 5429.0 Diagnosis of Pilonidal cyst/sinus
Rows: 20
Code Description Disease ReadcodeDescr Readcode
1109.0 Diagnosis of Pilonidal cyst/sinus Pilonidal cyst/sinus Pilonidal sinus without abscess M063.00
1110.0 Procedure for Pilonidal cyst/sinus Pilonidal cyst/sinus Operation on pilonidal sinus NOS 773Bz00
1420.0 Diagnosis of Pilonidal cyst/sinus Pilonidal cyst/sinus Pilonidal cyst with abscess M060.00
1421.0 Procedure for Pilonidal cyst/sinus Pilonidal cyst/sinus Excision of pilonidal sinus NEC 773B400
1488.0 Procedure for Pilonidal cyst/sinus Pilonidal cyst/sinus Pilonidal sinus operations 773B.00
16096.0 Procedure for Pilonidal cyst/sinus Pilonidal cyst/sinus Drainage of pilonidal sinus 773B700
26075.0 Diagnosis of Pilonidal cyst/sinus Pilonidal cyst/sinus Pilonidal sinus with abscess M062.00
28472.0 Procedure for Pilonidal cyst/sinus Pilonidal cyst/sinus Laying open of track of pilonidal sinus 773B500
31272.0 Procedure for Pilonidal cyst/sinus Pilonidal cyst/sinus Excision of pilonidal sinus and skin flap NEC 773B100
33570.0 Procedure for Pilonidal cyst/sinus Pilonidal cyst/sinus Excision of pilonidal sinus and suture HFQ 773B300
33891.0 Diagnosis of Pilonidal cyst/sinus Pilonidal cyst/sinus Pilonidal cyst with no abscess M061.00
34294.0 Procedure for Pilonidal cyst/sinus Pilonidal cyst/sinus Other specified operation on pilonidal sinus 773By00
3773.0 Procedure for Pilonidal cyst/sinus Pilonidal cyst/sinus Excision of pilonidal sinus NOS 773Bx00
5077.0 Diagnosis of Pilonidal cyst/sinus Pilonidal cyst/sinus Pilonidal sinus/cyst M06..00
5429.0 Diagnosis of Pilonidal cyst/sinus Pilonidal cyst/sinus Pilonidal sinus/cyst NOS M06z.00
57103.0 Procedure for Pilonidal cyst/sinus Pilonidal cyst/sinus Excision of pilonidal sinus and Z plasty skin flap HFQ 773B000
57629.0 Procedure for Pilonidal cyst/sinus Pilonidal cyst/sinus Destruction of pilonidal sinus NEC 773B900
61171.0 Procedure for Pilonidal cyst/sinus Pilonidal cyst/sinus Other specified excision of pilonidal sinus 773BA00
63149.0 Procedure for Pilonidal cyst/sinus Pilonidal cyst/sinus Excision of pilonidal sinus and skin graft HFQ 773B200
71740.0 Procedure for Pilonidal cyst/sinus Pilonidal cyst/sinus Injection of radiocontrast substance into pilonidal sinus 773B800
Rows: 1
Code Description Disease Category
L05 Pilonidal cyst Pilonidal cyst/sinus Diagnosis of Pilonidal cyst/sinus
Rows: 12
Code Description Disease Category
H59.1 Excision of pilonidal sinus and Z plasty skin flap HFQ Pilonidal cyst/sinus Procedure for Pilonidal cyst
H59.2 Excision of pilonidal sinus and skin flap NEC Pilonidal cyst/sinus Procedure for Pilonidal cyst
H59.3 Excision of pilonidal sinus and skin graft HFQ Pilonidal cyst/sinus Procedure for Pilonidal cyst
H59.4 Excision of pilonidal sinus and suture HFQ Pilonidal cyst/sinus Procedure for Pilonidal cyst
H59.8 Other specified excision of pilonidal sinus Pilonidal cyst/sinus Procedure for Pilonidal cyst
H59.9 Unspecified excision of pilonidal sinus Pilonidal cyst/sinus Procedure for Pilonidal cyst
H60.1 Destruction of pilonidal sinus Pilonidal cyst/sinus Procedure for Pilonidal cyst
H60.2 Laying open of pilonidal sinus Pilonidal cyst/sinus Procedure for Pilonidal cyst
H60.3 Drainage of pilonidal sinus Pilonidal cyst/sinus Procedure for Pilonidal cyst
H60.4 Injection of radiocontrast substance into pilonidal sinus Pilonidal cyst/sinus Procedure for Pilonidal cyst
H60.8 Other specified other operations on pilonidal sinus Pilonidal cyst/sinus Procedure for Pilonidal cyst
H60.9 Unspecified other operations on pilonidal sinus Pilonidal cyst/sinus Procedure for Pilonidal cyst

API

To Export Phenotype Details:

Format API
XML site_root/api/v1/public/phenotypes/PH238/version/476/detail/?format=xml
JSON site_root/api/v1/public/phenotypes/PH238/version/476/detail/?format=json
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get details of phenotype

details = get_phenotype_detail_by_version('PH238', '476', api_client=client)

To Export Phenotype Code List:

Format API
XML site_root/api/v1/public/phenotypes/PH238/version/476/export/codes/?format=xml
JSON site_root/api/v1/public/phenotypes/PH238/version/476/export/codes/?format=json
CSV site_root/phenotypes/PH238/version/476/export/codes/
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get codelists of phenotype

codelists = get_phenotype_code_list('PH238', '476', api_client=client)

Version History

Version
ID
Name Owner Publish date
476 Pilonidal cyst/sinus ieuan.scanlon 2021-10-06 currently shown

Export - export all codes into a csv file/JSON/XML for the current phenotype version.

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