Phenotype Library | phenotype: Pleural effusion

Pleural effusion

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

PH240

Version ID

480

Type

Disease or Syndrome

Data Sources

CPRD GOLD , HES Admitted Patient Care data for CPRD GOLD

Valid event data range

01/01/1999 - 01/07/2016

Sex

♀ Female ♂ Male

Agreement Date

2019-05-20

Coding system

Read codes v2 ICD10 codes Med codes

Collections

CALIBER Phenotype Library

Definition

At the specified date, a patient is defined as having had 'Pleural effusion' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Primary care

Other 'Pleural effusion' diagnosis or history of diagnosis during a consultation

OR Secondary care (ICD10)

ALL diagnoses of 'Pleural effusion' or history of diagnosis during a hospitalization

Implementation

PhenoFlow Implementation:

https://kclhi.org/phenoflow/phenotype/download/699

Publications

Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

CSV

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XML

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C1364/3867 Pleural effusion - Primary care - Read codes v2

Rows: 16

Code	Description	Disease	Medcode	Category
H511.00	Bacterial pleurisy with effusion	Pleural effusion	31689.0	Diagnosis of Pleural effusion
H511000	Pneumococcal pleurisy with effusion	Pleural effusion	43345.0	Diagnosis of Pleural effusion
H511100	Staphylococcal pleurisy with effusion	Pleural effusion	93010.0	Diagnosis of Pleural effusion
H511200	Streptococcal pleurisy with effusion	Pleural effusion	108784.0	Diagnosis of Pleural effusion
H511z00	Bacterial pleurisy with effusion NOS	Pleural effusion	44842.0	Diagnosis of Pleural effusion
H51y.00	Other pleural effusion excluding mention of tuberculosis	Pleural effusion	30065.0	Diagnosis of Pleural effusion
H51y400	Hydrothorax	Pleural effusion	33577.0	Diagnosis of Pleural effusion
H51y500	Chylous effusion	Pleural effusion	43807.0	Diagnosis of Pleural effusion
H51y700	Malignant pleural effusion	Pleural effusion	7593.0	Diagnosis of Pleural effusion
H51yz00	Other pleural effusion	Pleural effusion	18081.0	Diagnosis of Pleural effusion
H51z.00	Pleural effusion NOS	Pleural effusion	947.0	Diagnosis of Pleural effusion
H51z000	Exudative pleurisy NOS	Pleural effusion	60142.0	Diagnosis of Pleural effusion
H51z100	Serofibrinous pleurisy NOS	Pleural effusion	68470.0	Diagnosis of Pleural effusion
H51z200	Serous pleurisy NOS	Pleural effusion	55211.0	Diagnosis of Pleural effusion
H51zz00	Pleural effusion NOS	Pleural effusion	9559.0	Diagnosis of Pleural effusion
Hyu7000	[X]Pleural effusion in conditions classified elsewhere	Pleural effusion	52850.0	Diagnosis of Pleural effusion

C1365/3869 Pleural effusion - Primary care - Med codes

Rows: 16

Code	Description	Disease	ReadcodeDescr	Readcode
108784.0	Diagnosis of Pleural effusion	Pleural effusion	Streptococcal pleurisy with effusion	H511200
18081.0	Diagnosis of Pleural effusion	Pleural effusion	Other pleural effusion	H51yz00
30065.0	Diagnosis of Pleural effusion	Pleural effusion	Other pleural effusion excluding mention of tuberculosis	H51y.00
31689.0	Diagnosis of Pleural effusion	Pleural effusion	Bacterial pleurisy with effusion	H511.00
33577.0	Diagnosis of Pleural effusion	Pleural effusion	Hydrothorax	H51y400
43345.0	Diagnosis of Pleural effusion	Pleural effusion	Pneumococcal pleurisy with effusion	H511000
43807.0	Diagnosis of Pleural effusion	Pleural effusion	Chylous effusion	H51y500
44842.0	Diagnosis of Pleural effusion	Pleural effusion	Bacterial pleurisy with effusion NOS	H511z00
52850.0	Diagnosis of Pleural effusion	Pleural effusion	[X]Pleural effusion in conditions classified elsewhere	Hyu7000
55211.0	Diagnosis of Pleural effusion	Pleural effusion	Serous pleurisy NOS	H51z200
60142.0	Diagnosis of Pleural effusion	Pleural effusion	Exudative pleurisy NOS	H51z000
68470.0	Diagnosis of Pleural effusion	Pleural effusion	Serofibrinous pleurisy NOS	H51z100
7593.0	Diagnosis of Pleural effusion	Pleural effusion	Malignant pleural effusion	H51y700
93010.0	Diagnosis of Pleural effusion	Pleural effusion	Staphylococcal pleurisy with effusion	H511100
947.0	Diagnosis of Pleural effusion	Pleural effusion	Pleural effusion NOS	H51z.00
9559.0	Diagnosis of Pleural effusion	Pleural effusion	Pleural effusion NOS	H51zz00

C1366/3871 Pleural effusion - Secondary care - Diagnoses - ICD10 codes

Rows: 2

Code	Description	Disease	Category
J90	Pleural effusion, not elsewhere classified	Pleural effusion	Diagnosis of Pleural effusion
J91	Pleural effusion in conditions classified elsewhere	Pleural effusion	Diagnosis of Pleural effusion

API

To Export Phenotype Details:

Format	API
XML	site_root/api/v1/public/phenotypes/PH240/version/480/detail/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH240/version/480/detail/?format=json
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get details of phenotype details = get_phenotype_detail_by_version('PH240', '480', api_client=client)`

To Export Phenotype Code List:

Format	API
XML	site_root/api/v1/public/phenotypes/PH240/version/480/export/codes/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH240/version/480/export/codes/?format=json
CSV	site_root/phenotypes/PH240/version/480/export/codes/
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get codelists of phenotype codelists = get_phenotype_code_list('PH240', '480', api_client=client)`

Version History

Version ID	Name	Owner	Publish date
480	Pleural effusion	ieuan.scanlon	2021-10-06	currently shown