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Pleural effusion

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

Type
Disease or Syndrome
ID
PH240
Version ID
480
Valid event data range
01/01/1999 - 01/07/2016
Sex
Female, Male
Agreement Date
2019-05-20
Coding system
Read codes v2 ICD10 codes Med codes
Tags /Collections
CALIBER Phenotype Library

Definition

At the specified date, a patient is defined as having had 'Pleural effusion' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Primary care

  1. Other 'Pleural effusion' diagnosis or history of diagnosis during a consultation

OR Secondary care (ICD10)

  1. ALL diagnoses of 'Pleural effusion' or history of diagnosis during a hospitalization

Implementation


Publications

  • Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

Rows: 16
Code Description Disease Medcode Category
H511.00 Bacterial pleurisy with effusion Pleural effusion 31689.0 Diagnosis of Pleural effusion
H511000 Pneumococcal pleurisy with effusion Pleural effusion 43345.0 Diagnosis of Pleural effusion
H511100 Staphylococcal pleurisy with effusion Pleural effusion 93010.0 Diagnosis of Pleural effusion
H511200 Streptococcal pleurisy with effusion Pleural effusion 108784.0 Diagnosis of Pleural effusion
H511z00 Bacterial pleurisy with effusion NOS Pleural effusion 44842.0 Diagnosis of Pleural effusion
H51y.00 Other pleural effusion excluding mention of tuberculosis Pleural effusion 30065.0 Diagnosis of Pleural effusion
H51y400 Hydrothorax Pleural effusion 33577.0 Diagnosis of Pleural effusion
H51y500 Chylous effusion Pleural effusion 43807.0 Diagnosis of Pleural effusion
H51y700 Malignant pleural effusion Pleural effusion 7593.0 Diagnosis of Pleural effusion
H51yz00 Other pleural effusion Pleural effusion 18081.0 Diagnosis of Pleural effusion
H51z.00 Pleural effusion NOS Pleural effusion 947.0 Diagnosis of Pleural effusion
H51z000 Exudative pleurisy NOS Pleural effusion 60142.0 Diagnosis of Pleural effusion
H51z100 Serofibrinous pleurisy NOS Pleural effusion 68470.0 Diagnosis of Pleural effusion
H51z200 Serous pleurisy NOS Pleural effusion 55211.0 Diagnosis of Pleural effusion
H51zz00 Pleural effusion NOS Pleural effusion 9559.0 Diagnosis of Pleural effusion
Hyu7000 [X]Pleural effusion in conditions classified elsewhere Pleural effusion 52850.0 Diagnosis of Pleural effusion
Rows: 16
Code Description Disease ReadcodeDescr Readcode
108784.0 Diagnosis of Pleural effusion Pleural effusion Streptococcal pleurisy with effusion H511200
18081.0 Diagnosis of Pleural effusion Pleural effusion Other pleural effusion H51yz00
30065.0 Diagnosis of Pleural effusion Pleural effusion Other pleural effusion excluding mention of tuberculosis H51y.00
31689.0 Diagnosis of Pleural effusion Pleural effusion Bacterial pleurisy with effusion H511.00
33577.0 Diagnosis of Pleural effusion Pleural effusion Hydrothorax H51y400
43345.0 Diagnosis of Pleural effusion Pleural effusion Pneumococcal pleurisy with effusion H511000
43807.0 Diagnosis of Pleural effusion Pleural effusion Chylous effusion H51y500
44842.0 Diagnosis of Pleural effusion Pleural effusion Bacterial pleurisy with effusion NOS H511z00
52850.0 Diagnosis of Pleural effusion Pleural effusion [X]Pleural effusion in conditions classified elsewhere Hyu7000
55211.0 Diagnosis of Pleural effusion Pleural effusion Serous pleurisy NOS H51z200
60142.0 Diagnosis of Pleural effusion Pleural effusion Exudative pleurisy NOS H51z000
68470.0 Diagnosis of Pleural effusion Pleural effusion Serofibrinous pleurisy NOS H51z100
7593.0 Diagnosis of Pleural effusion Pleural effusion Malignant pleural effusion H51y700
93010.0 Diagnosis of Pleural effusion Pleural effusion Staphylococcal pleurisy with effusion H511100
947.0 Diagnosis of Pleural effusion Pleural effusion Pleural effusion NOS H51z.00
9559.0 Diagnosis of Pleural effusion Pleural effusion Pleural effusion NOS H51zz00
Rows: 2
Code Description Disease Category
J90 Pleural effusion, not elsewhere classified Pleural effusion Diagnosis of Pleural effusion
J91 Pleural effusion in conditions classified elsewhere Pleural effusion Diagnosis of Pleural effusion

API

To Export Phenotype Details:

Format API
XML site_root/api/v1/public/phenotypes/PH240/version/480/detail/?format=xml
JSON site_root/api/v1/public/phenotypes/PH240/version/480/detail/?format=json
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get details of phenotype

details = get_phenotype_detail_by_version('PH240', '480', api_client=client)

To Export Phenotype Code List:

Format API
XML site_root/api/v1/public/phenotypes/PH240/version/480/export/codes/?format=xml
JSON site_root/api/v1/public/phenotypes/PH240/version/480/export/codes/?format=json
CSV site_root/phenotypes/PH240/version/480/export/codes/
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get codelists of phenotype

codelists = get_phenotype_code_list('PH240', '480', api_client=client)

Version History

Version
ID
Name Owner Publish date
480 Pleural effusion ieuan.scanlon 2021-10-06 currently shown

Export - export all codes into a csv file/JSON/XML for the current phenotype version.

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