Phenotype Library | phenotype: Pneumothorax

Pneumothorax

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

PH242

Version ID

484

Type

Disease or Syndrome

Data Sources

CPRD GOLD , HES Admitted Patient Care data for CPRD GOLD

Valid event data range

01/01/1999 - 01/07/2016

Sex

♀ Female ♂ Male

Agreement Date

2019-05-20

Coding system

Read codes v2 ICD10 codes Med codes

Collections

CALIBER Phenotype Library

Definition

At the specified date, a patient is defined as having had 'Pneumothorax' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Primary care

Other 'Pneumothorax' diagnosis or history of diagnosis during a consultation

OR Secondary care (ICD10)

ALL diagnoses of 'Pneumothorax' or history of diagnosis during a hospitalization

Implementation

PhenoFlow Implementation:

https://kclhi.org/phenoflow/phenotype/download/703

Publications

Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

CSV

JSON

XML

Expand All / Collapse All

C1370/3879 Pneumothorax - Primary care - Read codes v2

Rows: 11

Code	Description	Disease	Medcode	Category
14B5.00	H/O: pneumothorax	Pneumothorax	5131.0	History of Pneumothorax
H52..00	Pneumothorax	Pneumothorax	1550.0	Diagnosis of Pneumothorax
H520.00	Spontaneous tension pneumothorax	Pneumothorax	27821.0	Diagnosis of Pneumothorax
H52y.00	Other spontaneous pneumothorax	Pneumothorax	23766.0	Diagnosis of Pneumothorax
H52y000	Acute pneumothorax NOS	Pneumothorax	36017.0	Diagnosis of Pneumothorax
H52y100	Chronic pneumothorax	Pneumothorax	70492.0	Diagnosis of Pneumothorax
H52yz00	Other spontaneous pneumothorax NOS	Pneumothorax	2486.0	Diagnosis of Pneumothorax
H52yz11	Spontaneous pneumothorax NOS	Pneumothorax	9101.0	Diagnosis of Pneumothorax
H52z.00	Pneumothorax NOS	Pneumothorax	28695.0	Diagnosis of Pneumothorax
Hyu7100	[X]Other spontaneous pneumothorax	Pneumothorax	98427.0	Diagnosis of Pneumothorax
Hyu7200	[X]Other pneumothorax	Pneumothorax	53808.0	Diagnosis of Pneumothorax

C1371/3881 Pneumothorax - Primary care - Med codes

Rows: 11

Code	Description	Disease	ReadcodeDescr	Readcode
1550.0	Diagnosis of Pneumothorax	Pneumothorax	Pneumothorax	H52..00
23766.0	Diagnosis of Pneumothorax	Pneumothorax	Other spontaneous pneumothorax	H52y.00
2486.0	Diagnosis of Pneumothorax	Pneumothorax	Other spontaneous pneumothorax NOS	H52yz00
27821.0	Diagnosis of Pneumothorax	Pneumothorax	Spontaneous tension pneumothorax	H520.00
28695.0	Diagnosis of Pneumothorax	Pneumothorax	Pneumothorax NOS	H52z.00
36017.0	Diagnosis of Pneumothorax	Pneumothorax	Acute pneumothorax NOS	H52y000
5131.0	History of Pneumothorax	Pneumothorax	H/O: pneumothorax	14B5.00
53808.0	Diagnosis of Pneumothorax	Pneumothorax	[X]Other pneumothorax	Hyu7200
70492.0	Diagnosis of Pneumothorax	Pneumothorax	Chronic pneumothorax	H52y100
9101.0	Diagnosis of Pneumothorax	Pneumothorax	Spontaneous pneumothorax NOS	H52yz11
98427.0	Diagnosis of Pneumothorax	Pneumothorax	[X]Other spontaneous pneumothorax	Hyu7100

C1372/3883 Pneumothorax - Secondary care - Diagnoses - ICD10 codes

Rows: 1

Code	Description	Disease	Category
J93	Pneumothorax	Pneumothorax	Diagnosis of Pneumothorax

API

To Export Phenotype Details:

Format	API
XML	site_root/api/v1/public/phenotypes/PH242/version/484/detail/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH242/version/484/detail/?format=json
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get details of phenotype details = get_phenotype_detail_by_version('PH242', '484', api_client=client)`

To Export Phenotype Code List:

Format	API
XML	site_root/api/v1/public/phenotypes/PH242/version/484/export/codes/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH242/version/484/export/codes/?format=json
CSV	site_root/phenotypes/PH242/version/484/export/codes/
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get codelists of phenotype codelists = get_phenotype_code_list('PH242', '484', api_client=client)`

Version History

Version ID	Name	Owner	Publish date
484	Pneumothorax	ieuan.scanlon	2021-10-06	currently shown