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Pneumothorax

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

Type
Disease or Syndrome
ID
PH242
Version ID
484
Valid event data range
01/01/1999 - 01/07/2016
Sex
Female, Male
Agreement Date
2019-05-20
Coding system
Read codes v2 ICD10 codes Med codes
Tags /Collections
CALIBER Phenotype Library

Definition

At the specified date, a patient is defined as having had 'Pneumothorax' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Primary care

  1. Other 'Pneumothorax' diagnosis or history of diagnosis during a consultation

OR Secondary care (ICD10)

  1. ALL diagnoses of 'Pneumothorax' or history of diagnosis during a hospitalization

Implementation


Publications

  • Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

Rows: 11
Code Description Disease Medcode Category
14B5.00 H/O: pneumothorax Pneumothorax 5131.0 History of Pneumothorax
H52..00 Pneumothorax Pneumothorax 1550.0 Diagnosis of Pneumothorax
H520.00 Spontaneous tension pneumothorax Pneumothorax 27821.0 Diagnosis of Pneumothorax
H52y.00 Other spontaneous pneumothorax Pneumothorax 23766.0 Diagnosis of Pneumothorax
H52y000 Acute pneumothorax NOS Pneumothorax 36017.0 Diagnosis of Pneumothorax
H52y100 Chronic pneumothorax Pneumothorax 70492.0 Diagnosis of Pneumothorax
H52yz00 Other spontaneous pneumothorax NOS Pneumothorax 2486.0 Diagnosis of Pneumothorax
H52yz11 Spontaneous pneumothorax NOS Pneumothorax 9101.0 Diagnosis of Pneumothorax
H52z.00 Pneumothorax NOS Pneumothorax 28695.0 Diagnosis of Pneumothorax
Hyu7100 [X]Other spontaneous pneumothorax Pneumothorax 98427.0 Diagnosis of Pneumothorax
Hyu7200 [X]Other pneumothorax Pneumothorax 53808.0 Diagnosis of Pneumothorax
Rows: 11
Code Description Disease ReadcodeDescr Readcode
1550.0 Diagnosis of Pneumothorax Pneumothorax Pneumothorax H52..00
23766.0 Diagnosis of Pneumothorax Pneumothorax Other spontaneous pneumothorax H52y.00
2486.0 Diagnosis of Pneumothorax Pneumothorax Other spontaneous pneumothorax NOS H52yz00
27821.0 Diagnosis of Pneumothorax Pneumothorax Spontaneous tension pneumothorax H520.00
28695.0 Diagnosis of Pneumothorax Pneumothorax Pneumothorax NOS H52z.00
36017.0 Diagnosis of Pneumothorax Pneumothorax Acute pneumothorax NOS H52y000
5131.0 History of Pneumothorax Pneumothorax H/O: pneumothorax 14B5.00
53808.0 Diagnosis of Pneumothorax Pneumothorax [X]Other pneumothorax Hyu7200
70492.0 Diagnosis of Pneumothorax Pneumothorax Chronic pneumothorax H52y100
9101.0 Diagnosis of Pneumothorax Pneumothorax Spontaneous pneumothorax NOS H52yz11
98427.0 Diagnosis of Pneumothorax Pneumothorax [X]Other spontaneous pneumothorax Hyu7100
Rows: 1
Code Description Disease Category
J93 Pneumothorax Pneumothorax Diagnosis of Pneumothorax

API

To Export Phenotype Details:

Format API
XML site_root/api/v1/public/phenotypes/PH242/version/484/detail/?format=xml
JSON site_root/api/v1/public/phenotypes/PH242/version/484/detail/?format=json
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get details of phenotype

details = get_phenotype_detail_by_version('PH242', '484', api_client=client)

To Export Phenotype Code List:

Format API
XML site_root/api/v1/public/phenotypes/PH242/version/484/export/codes/?format=xml
JSON site_root/api/v1/public/phenotypes/PH242/version/484/export/codes/?format=json
CSV site_root/phenotypes/PH242/version/484/export/codes/
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get codelists of phenotype

codelists = get_phenotype_code_list('PH242', '484', api_client=client)

Version History

Version
ID
Name Owner Publish date
484 Pneumothorax ieuan.scanlon 2021-10-06 currently shown

Export - export all codes into a csv file/JSON/XML for the current phenotype version.

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