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Portal hypertension

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

Type
Disease or Syndrome
ID
PH243
Version ID
486
Valid event data range
01/01/1999 - 01/07/2016
Sex
Female, Male
Agreement Date
2019-05-20
Coding system
Read codes v2 ICD10 codes Med codes
Tags /Collections
CALIBER Phenotype Library

Definition

At the specified date, a patient is defined as having had 'Portal hypertension' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Primary care

  1. 'Portal hypertension' diagnosis or history of diagnosis or procedure during a consultation

OR Secondary care

  1. ALL diagnoses of 'Portal hypertension' or history of diagnosis during a hospitalization

Implementation


Publications

  • Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

Rows: 1
Code Description Disease Medcode Category
J623.00 Portal hypertension Portal hypertension 5129.0 Diagnosis of Portal hypertension
Rows: 1
Code Description Disease ReadcodeDescr Readcode
5129.0 Diagnosis of Portal hypertension Portal hypertension Portal hypertension J623.00
Rows: 1
Code Description Disease Category
K76.6 Portal hypertension Portal hypertension Diagnosis of Portal hypertension

API

To Export Phenotype Details:

Format API
XML site_root/api/v1/public/phenotypes/PH243/version/486/detail/?format=xml
JSON site_root/api/v1/public/phenotypes/PH243/version/486/detail/?format=json
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get details of phenotype

details = get_phenotype_detail_by_version('PH243', '486', api_client=client)

To Export Phenotype Code List:

Format API
XML site_root/api/v1/public/phenotypes/PH243/version/486/export/codes/?format=xml
JSON site_root/api/v1/public/phenotypes/PH243/version/486/export/codes/?format=json
CSV site_root/phenotypes/PH243/version/486/export/codes/
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get codelists of phenotype

codelists = get_phenotype_code_list('PH243', '486', api_client=client)

Version History

Version
ID
Name Owner Publish date
486 Portal hypertension ieuan.scanlon 2021-10-06 currently shown

Export - export all codes into a csv file/JSON/XML for the current phenotype version.

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