Phenotype Library | phenotype: Prematurity

Prematurity

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

PH246

Version ID

492

Type

Disease or Syndrome

Data Sources

CPRD GOLD , HES Admitted Patient Care data for CPRD GOLD

Valid event data range

01/01/1999 - 01/07/2016

Sex

♀ Female ♂ Male

Agreement Date

2019-05-20

Coding system

Read codes v2 ICD10 codes Med codes

Collections

CALIBER Phenotype Library

Definition

At the specified date, a patient is defined as having had Prematurity IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Primary care

Prematurity diagnosis or history of diagnosis during a consultation AND IF the patient is aged < 1y at the first event date OR Secondary care
ALL diagnoses of Prematurity or history of diagnosis during a hospitalization AND IF the patient is aged < 1y at the first event date

Implementation

PhenoFlow Implementation:

https://kclhi.org/phenoflow/phenotype/download/715

Publications

Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

CSV

JSON

XML

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C1382/3903 Prematurity - Primary care - Read codes v2

Rows: 23

Code	Description	Disease	Medcode	Category
1546.00	H/O: premature delivery	Prematurity	11829.0	History of Prematurity
635..13	Premature baby	Prematurity	164.0	Diagnosis of Prematurity
6351.00	Baby premature 36-38 weeks	Prematurity	29074.0	Diagnosis of Prematurity
6352.00	Baby v. premature 32-36 weeks	Prematurity	27662.0	Diagnosis of Prematurity
6353.00	Baby extremely prem.28-32 week	Prematurity	17915.0	Diagnosis of Prematurity
6356.00	Baby premature 26-28 weeks	Prematurity	29996.0	Diagnosis of Prematurity
6357.00	Baby premature 24-26 weeks	Prematurity	45702.0	Diagnosis of Prematurity
635A.00	Baby premature 37 weeks	Prematurity	19598.0	Diagnosis of Prematurity
635B.00	Baby premature 36 weeks	Prematurity	17968.0	Diagnosis of Prematurity
635C.00	Preterm infant status	Prematurity	106617.0	Diagnosis of Prematurity
635C.11	Preterm	Prematurity	107078.0	Diagnosis of Prematurity
Q11..11	Baby born premature	Prematurity	20429.0	Diagnosis of Prematurity
Q110.00	Very premature - less than 1000g or less than 28 weeks	Prematurity	26683.0	Diagnosis of Prematurity
Q110.11	Immature baby	Prematurity	23926.0	Diagnosis of Prematurity
Q111.00	Premature - weight 1000g-2499g or gestation of 28-37weeks	Prematurity	23670.0	Diagnosis of Prematurity
Q112.00	Extreme immaturity	Prematurity	48011.0	Diagnosis of Prematurity
Q112.11	Extreme prematurity - less than 28 weeks	Prematurity	32439.0	Diagnosis of Prematurity
Q116.00	Premature infant 28-37 weeks	Prematurity	35209.0	Diagnosis of Prematurity
Q11z.00	Born premature NOS	Prematurity	1211.0	Diagnosis of Prematurity
Q317100	Prematurity with interstitial pulmonary fibrosis	Prematurity	46795.0	Diagnosis of Prematurity
Q432.00	Preterm delivery associated jaundice	Prematurity	7828.0	Diagnosis of Prematurity
Q456.00	Anaemia of prematurity	Prematurity	19574.0	Diagnosis of Prematurity
Qyu1100	[X]Other preterm infants	Prematurity	47154.0	Diagnosis of Prematurity

C1383/3905 Prematurity - Primary care - Med codes

Rows: 23

Code	Description	Disease	ReadcodeDescr	Readcode
106617.0	Diagnosis of Prematurity	Prematurity	Preterm infant status	635C.00
107078.0	Diagnosis of Prematurity	Prematurity	Preterm	635C.11
11829.0	History of Prematurity	Prematurity	H/O: premature delivery	1546.00
1211.0	Diagnosis of Prematurity	Prematurity	Born premature NOS	Q11z.00
164.0	Diagnosis of Prematurity	Prematurity	Premature baby	635..13
17915.0	Diagnosis of Prematurity	Prematurity	Baby extremely prem.28-32 week	6353.00
17968.0	Diagnosis of Prematurity	Prematurity	Baby premature 36 weeks	635B.00
19574.0	Diagnosis of Prematurity	Prematurity	Anaemia of prematurity	Q456.00
19598.0	Diagnosis of Prematurity	Prematurity	Baby premature 37 weeks	635A.00
20429.0	Diagnosis of Prematurity	Prematurity	Baby born premature	Q11..11
23670.0	Diagnosis of Prematurity	Prematurity	Premature - weight 1000g-2499g or gestation of 28-37weeks	Q111.00
23926.0	Diagnosis of Prematurity	Prematurity	Immature baby	Q110.11
26683.0	Diagnosis of Prematurity	Prematurity	Very premature - less than 1000g or less than 28 weeks	Q110.00
27662.0	Diagnosis of Prematurity	Prematurity	Baby v. premature 32-36 weeks	6352.00
29074.0	Diagnosis of Prematurity	Prematurity	Baby premature 36-38 weeks	6351.00
29996.0	Diagnosis of Prematurity	Prematurity	Baby premature 26-28 weeks	6356.00
32439.0	Diagnosis of Prematurity	Prematurity	Extreme prematurity - less than 28 weeks	Q112.11
35209.0	Diagnosis of Prematurity	Prematurity	Premature infant 28-37 weeks	Q116.00
45702.0	Diagnosis of Prematurity	Prematurity	Baby premature 24-26 weeks	6357.00
46795.0	Diagnosis of Prematurity	Prematurity	Prematurity with interstitial pulmonary fibrosis	Q317100
47154.0	Diagnosis of Prematurity	Prematurity	[X]Other preterm infants	Qyu1100
48011.0	Diagnosis of Prematurity	Prematurity	Extreme immaturity	Q112.00
7828.0	Diagnosis of Prematurity	Prematurity	Preterm delivery associated jaundice	Q432.00

C1384/3907 Prematurity - Secondary care - Diagnoses - ICD10 codes

Rows: 2

Code	Description	Disease	Category
P07.2	Extreme immaturity	Prematurity	Diagnosis of Prematurity
P07.3	Other preterm infants	Prematurity	Diagnosis of Prematurity

API

To Export Phenotype Details:

Format	API
XML	site_root/api/v1/public/phenotypes/PH246/version/492/detail/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH246/version/492/detail/?format=json
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get details of phenotype details = get_phenotype_detail_by_version('PH246', '492', api_client=client)`

To Export Phenotype Code List:

Format	API
XML	site_root/api/v1/public/phenotypes/PH246/version/492/export/codes/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH246/version/492/export/codes/?format=json
CSV	site_root/phenotypes/PH246/version/492/export/codes/
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get codelists of phenotype codelists = get_phenotype_code_list('PH246', '492', api_client=client)`

Version History

Version ID	Name	Owner	Publish date
492	Prematurity	ieuan.scanlon	2021-10-06	currently shown