Phenotype Library | phenotype: Primary Malignancy

Primary Malignancy_Bladder

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

PH248

Version ID

496

Type

Disease or Syndrome

Data Sources

CPRD GOLD , HES Admitted Patient Care data for CPRD GOLD

Valid event data range

01/01/1999 - 01/07/2016

Sex

♀ Female ♂ Male

Agreement Date

2019-05-20

Coding system

Read codes v2 ICD10 codes Med codes

Collections

CALIBER Phenotype Library

Definition

At the specified date, a patient is defined as having had Primary Malignancy Bladder IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Primary care

Primary Malignancy_Bladder diagnosis or history of diagnosis during a consultation

OR Secondary care

ALL diagnoses of Primary Malignancy_Bladder or history of diagnosis during a hospitalization

Implementation

PhenoFlow Implementation:

https://kclhi.org/phenoflow/phenotype/download/721

Publications

Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

CSV

JSON

XML

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C1388/3915 Primary Malignancy_Bladder - Primary care - Read codes v2

Rows: 14

Code	Description	Disease	Medcode	Category
B49..00	Malignant neoplasm of urinary bladder	Primary Malignancy_Bladder	779.0	Diagnosis of Primary Malignancy_Bladder
B490.00	Malignant neoplasm of trigone of urinary bladder	Primary Malignancy_Bladder	38862.0	Diagnosis of Primary Malignancy_Bladder
B491.00	Malignant neoplasm of dome of urinary bladder	Primary Malignancy_Bladder	44996.0	Diagnosis of Primary Malignancy_Bladder
B492.00	Malignant neoplasm of lateral wall of urinary bladder	Primary Malignancy_Bladder	35963.0	Diagnosis of Primary Malignancy_Bladder
B493.00	Malignant neoplasm of anterior wall of urinary bladder	Primary Malignancy_Bladder	19162.0	Diagnosis of Primary Malignancy_Bladder
B494.00	Malignant neoplasm of posterior wall of urinary bladder	Primary Malignancy_Bladder	42012.0	Diagnosis of Primary Malignancy_Bladder
B495.00	Malignant neoplasm of bladder neck	Primary Malignancy_Bladder	41571.0	Diagnosis of Primary Malignancy_Bladder
B496.00	Malignant neoplasm of ureteric orifice	Primary Malignancy_Bladder	28241.0	Diagnosis of Primary Malignancy_Bladder
B497.00	Malignant neoplasm of urachus	Primary Malignancy_Bladder	42023.0	Diagnosis of Primary Malignancy_Bladder
B498.00	Local recurrence of malignant tumour of urinary bladder	Primary Malignancy_Bladder	105388.0	Diagnosis of Primary Malignancy_Bladder
B49y.00	Malignant neoplasm of other site of urinary bladder	Primary Malignancy_Bladder	36949.0	Diagnosis of Primary Malignancy_Bladder
B49y000	Malignant neoplasm, overlapping lesion of bladder	Primary Malignancy_Bladder	47801.0	Diagnosis of Primary Malignancy_Bladder
B49z.00	Malignant neoplasm of urinary bladder NOS	Primary Malignancy_Bladder	31102.0	Diagnosis of Primary Malignancy_Bladder
ZV10511	[V]Personal history of malignant neoplasm of bladder	Primary Malignancy_Bladder	35816.0	History of Primary Malignancy_Bladder

C1389/3917 Primary Malignancy_Bladder - Primary care - Med codes

Rows: 14

Code	Description	Disease	ReadcodeDescr	Readcode
105388.0	Diagnosis of Primary Malignancy_Bladder	Primary Malignancy_Bladder	Local recurrence of malignant tumour of urinary bladder	B498.00
19162.0	Diagnosis of Primary Malignancy_Bladder	Primary Malignancy_Bladder	Malignant neoplasm of anterior wall of urinary bladder	B493.00
28241.0	Diagnosis of Primary Malignancy_Bladder	Primary Malignancy_Bladder	Malignant neoplasm of ureteric orifice	B496.00
31102.0	Diagnosis of Primary Malignancy_Bladder	Primary Malignancy_Bladder	Malignant neoplasm of urinary bladder NOS	B49z.00
35816.0	History of Primary Malignancy_Bladder	Primary Malignancy_Bladder	[V]Personal history of malignant neoplasm of bladder	ZV10511
35963.0	Diagnosis of Primary Malignancy_Bladder	Primary Malignancy_Bladder	Malignant neoplasm of lateral wall of urinary bladder	B492.00
36949.0	Diagnosis of Primary Malignancy_Bladder	Primary Malignancy_Bladder	Malignant neoplasm of other site of urinary bladder	B49y.00
38862.0	Diagnosis of Primary Malignancy_Bladder	Primary Malignancy_Bladder	Malignant neoplasm of trigone of urinary bladder	B490.00
41571.0	Diagnosis of Primary Malignancy_Bladder	Primary Malignancy_Bladder	Malignant neoplasm of bladder neck	B495.00
42012.0	Diagnosis of Primary Malignancy_Bladder	Primary Malignancy_Bladder	Malignant neoplasm of posterior wall of urinary bladder	B494.00
42023.0	Diagnosis of Primary Malignancy_Bladder	Primary Malignancy_Bladder	Malignant neoplasm of urachus	B497.00
44996.0	Diagnosis of Primary Malignancy_Bladder	Primary Malignancy_Bladder	Malignant neoplasm of dome of urinary bladder	B491.00
47801.0	Diagnosis of Primary Malignancy_Bladder	Primary Malignancy_Bladder	Malignant neoplasm, overlapping lesion of bladder	B49y000
779.0	Diagnosis of Primary Malignancy_Bladder	Primary Malignancy_Bladder	Malignant neoplasm of urinary bladder	B49..00

C1390/3919 Primary Malignancy_Bladder - Secondary care - Diagnoses - ICD10 codes

Rows: 1

Code	Description	Disease	Category
C67	Malignant neoplasm of bladder	Primary Malignancy_Bladder	Diagnosis of Primary Malignancy_Bladder

API

To Export Phenotype Details:

Format	API
XML	site_root/api/v1/public/phenotypes/PH248/version/496/detail/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH248/version/496/detail/?format=json
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get details of phenotype details = get_phenotype_detail_by_version('PH248', '496', api_client=client)`

To Export Phenotype Code List:

Format	API
XML	site_root/api/v1/public/phenotypes/PH248/version/496/export/codes/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH248/version/496/export/codes/?format=json
CSV	site_root/phenotypes/PH248/version/496/export/codes/
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get codelists of phenotype codelists = get_phenotype_code_list('PH248', '496', api_client=client)`

Version History

Version ID	Name	Owner	Publish date
496	Primary Malignancy_Bladder	ieuan.scanlon	2021-10-06	currently shown