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Primary Malignancy_Bladder

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

ID
PH248
Version ID
496
Type
Disease or Syndrome
Valid event data range
01/01/1999 - 01/07/2016
Sex
♀  Female ♂  Male
Agreement Date
2019-05-20
Coding system
Read codes v2 ICD10 codes Med codes
Collections
CALIBER Phenotype Library
Tags
No tags

Definition

At the specified date, a patient is defined as having had Primary Malignancy Bladder IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Primary care

  1. Primary Malignancy_Bladder diagnosis or history of diagnosis during a consultation

OR Secondary care

  1. ALL diagnoses of Primary Malignancy_Bladder or history of diagnosis during a hospitalization

Implementation


Publications

  • Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

Rows: 14
Code Description Disease Medcode Category
B49..00 Malignant neoplasm of urinary bladder Primary Malignancy_Bladder 779.0 Diagnosis of Primary Malignancy_Bladder
B490.00 Malignant neoplasm of trigone of urinary bladder Primary Malignancy_Bladder 38862.0 Diagnosis of Primary Malignancy_Bladder
B491.00 Malignant neoplasm of dome of urinary bladder Primary Malignancy_Bladder 44996.0 Diagnosis of Primary Malignancy_Bladder
B492.00 Malignant neoplasm of lateral wall of urinary bladder Primary Malignancy_Bladder 35963.0 Diagnosis of Primary Malignancy_Bladder
B493.00 Malignant neoplasm of anterior wall of urinary bladder Primary Malignancy_Bladder 19162.0 Diagnosis of Primary Malignancy_Bladder
B494.00 Malignant neoplasm of posterior wall of urinary bladder Primary Malignancy_Bladder 42012.0 Diagnosis of Primary Malignancy_Bladder
B495.00 Malignant neoplasm of bladder neck Primary Malignancy_Bladder 41571.0 Diagnosis of Primary Malignancy_Bladder
B496.00 Malignant neoplasm of ureteric orifice Primary Malignancy_Bladder 28241.0 Diagnosis of Primary Malignancy_Bladder
B497.00 Malignant neoplasm of urachus Primary Malignancy_Bladder 42023.0 Diagnosis of Primary Malignancy_Bladder
B498.00 Local recurrence of malignant tumour of urinary bladder Primary Malignancy_Bladder 105388.0 Diagnosis of Primary Malignancy_Bladder
B49y.00 Malignant neoplasm of other site of urinary bladder Primary Malignancy_Bladder 36949.0 Diagnosis of Primary Malignancy_Bladder
B49y000 Malignant neoplasm, overlapping lesion of bladder Primary Malignancy_Bladder 47801.0 Diagnosis of Primary Malignancy_Bladder
B49z.00 Malignant neoplasm of urinary bladder NOS Primary Malignancy_Bladder 31102.0 Diagnosis of Primary Malignancy_Bladder
ZV10511 [V]Personal history of malignant neoplasm of bladder Primary Malignancy_Bladder 35816.0 History of Primary Malignancy_Bladder
Rows: 14
Code Description Disease ReadcodeDescr Readcode
105388.0 Diagnosis of Primary Malignancy_Bladder Primary Malignancy_Bladder Local recurrence of malignant tumour of urinary bladder B498.00
19162.0 Diagnosis of Primary Malignancy_Bladder Primary Malignancy_Bladder Malignant neoplasm of anterior wall of urinary bladder B493.00
28241.0 Diagnosis of Primary Malignancy_Bladder Primary Malignancy_Bladder Malignant neoplasm of ureteric orifice B496.00
31102.0 Diagnosis of Primary Malignancy_Bladder Primary Malignancy_Bladder Malignant neoplasm of urinary bladder NOS B49z.00
35816.0 History of Primary Malignancy_Bladder Primary Malignancy_Bladder [V]Personal history of malignant neoplasm of bladder ZV10511
35963.0 Diagnosis of Primary Malignancy_Bladder Primary Malignancy_Bladder Malignant neoplasm of lateral wall of urinary bladder B492.00
36949.0 Diagnosis of Primary Malignancy_Bladder Primary Malignancy_Bladder Malignant neoplasm of other site of urinary bladder B49y.00
38862.0 Diagnosis of Primary Malignancy_Bladder Primary Malignancy_Bladder Malignant neoplasm of trigone of urinary bladder B490.00
41571.0 Diagnosis of Primary Malignancy_Bladder Primary Malignancy_Bladder Malignant neoplasm of bladder neck B495.00
42012.0 Diagnosis of Primary Malignancy_Bladder Primary Malignancy_Bladder Malignant neoplasm of posterior wall of urinary bladder B494.00
42023.0 Diagnosis of Primary Malignancy_Bladder Primary Malignancy_Bladder Malignant neoplasm of urachus B497.00
44996.0 Diagnosis of Primary Malignancy_Bladder Primary Malignancy_Bladder Malignant neoplasm of dome of urinary bladder B491.00
47801.0 Diagnosis of Primary Malignancy_Bladder Primary Malignancy_Bladder Malignant neoplasm, overlapping lesion of bladder B49y000
779.0 Diagnosis of Primary Malignancy_Bladder Primary Malignancy_Bladder Malignant neoplasm of urinary bladder B49..00
Rows: 1
Code Description Disease Category
C67 Malignant neoplasm of bladder Primary Malignancy_Bladder Diagnosis of Primary Malignancy_Bladder

API

To Export Phenotype Details:

Format API
XML site_root/api/v1/public/phenotypes/PH248/version/496/detail/?format=xml
JSON site_root/api/v1/public/phenotypes/PH248/version/496/detail/?format=json
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get details of phenotype

details = get_phenotype_detail_by_version('PH248', '496', api_client=client)

To Export Phenotype Code List:

Format API
XML site_root/api/v1/public/phenotypes/PH248/version/496/export/codes/?format=xml
JSON site_root/api/v1/public/phenotypes/PH248/version/496/export/codes/?format=json
CSV site_root/phenotypes/PH248/version/496/export/codes/
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get codelists of phenotype

codelists = get_phenotype_code_list('PH248', '496', api_client=client)

Version History

Version
ID
Name Owner Publish date
496 Primary Malignancy_Bladder ieuan.scanlon 2021-10-06 currently shown

Export - export all codes into a csv file/JSON/XML for the current phenotype version.

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