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Primary Malignancy_Breast

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

Type
Disease or Syndrome
ID
PH252
Version ID
504
Valid event data range
01/01/1999 - 01/07/2016
Sex
Female, Male
Agreement Date
2019-05-20
Coding system
Read codes v2 ICD10 codes Med codes
Tags /Collections
CALIBER Phenotype Library

Definition

At the specified date, a patient is defined as having had Primary Malignancy Breast IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Primary care

  1. Primary Malignancy_Breast diagnosis or history of diagnosis during a consultation

OR Secondary care

  1. ALL diagnoses of Primary Malignancy_Breast or history of diagnosis during a hospitalization

Implementation


Publications

  • Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

Rows: 45
Code Description Disease Medcode Category
B34..00 Malignant neoplasm of female breast Primary Malignancy_Breast 3968.0 Diagnosis of Primary Malignancy_Breast
B34..11 Ca female breast Primary Malignancy_Breast 348.0 Diagnosis of Primary Malignancy_Breast
B340.00 Malignant neoplasm of nipple and areola of female breast Primary Malignancy_Breast 26853.0 Diagnosis of Primary Malignancy_Breast
B340000 Malignant neoplasm of nipple of female breast Primary Malignancy_Breast 23380.0 Diagnosis of Primary Malignancy_Breast
B340100 Malignant neoplasm of areola of female breast Primary Malignancy_Breast 64686.0 Diagnosis of Primary Malignancy_Breast
B340z00 Malignant neoplasm of nipple or areola of female breast NOS Primary Malignancy_Breast 59831.0 Diagnosis of Primary Malignancy_Breast
B341.00 Malignant neoplasm of central part of female breast Primary Malignancy_Breast 31546.0 Diagnosis of Primary Malignancy_Breast
B342.00 Malignant neoplasm of upper-inner quadrant of female breast Primary Malignancy_Breast 29826.0 Diagnosis of Primary Malignancy_Breast
B343.00 Malignant neoplasm of lower-inner quadrant of female breast Primary Malignancy_Breast 45222.0 Diagnosis of Primary Malignancy_Breast
B344.00 Malignant neoplasm of upper-outer quadrant of female breast Primary Malignancy_Breast 23399.0 Diagnosis of Primary Malignancy_Breast
B345.00 Malignant neoplasm of lower-outer quadrant of female breast Primary Malignancy_Breast 42070.0 Diagnosis of Primary Malignancy_Breast
B346.00 Malignant neoplasm of axillary tail of female breast Primary Malignancy_Breast 20685.0 Diagnosis of Primary Malignancy_Breast
B347.00 Malignant neoplasm, overlapping lesion of breast Primary Malignancy_Breast 49148.0 Diagnosis of Primary Malignancy_Breast
B34y.00 Malignant neoplasm of other site of female breast Primary Malignancy_Breast 56715.0 Diagnosis of Primary Malignancy_Breast
B34y000 Malignant neoplasm of ectopic site of female breast Primary Malignancy_Breast 95057.0 Diagnosis of Primary Malignancy_Breast
B34yz00 Malignant neoplasm of other site of female breast NOS Primary Malignancy_Breast 38475.0 Diagnosis of Primary Malignancy_Breast
B34z.00 Malignant neoplasm of female breast NOS Primary Malignancy_Breast 9470.0 Diagnosis of Primary Malignancy_Breast
B35..00 Malignant neoplasm of male breast Primary Malignancy_Breast 19423.0 Diagnosis of Primary Malignancy_Breast
B350.00 Malignant neoplasm of nipple and areola of male breast Primary Malignancy_Breast 54494.0 Diagnosis of Primary Malignancy_Breast
B350000 Malignant neoplasm of nipple of male breast Primary Malignancy_Breast 68480.0 Diagnosis of Primary Malignancy_Breast
B350100 Malignant neoplasm of areola of male breast Primary Malignancy_Breast 67884.0 Diagnosis of Primary Malignancy_Breast
B35z.00 Malignant neoplasm of other site of male breast Primary Malignancy_Breast 54202.0 Diagnosis of Primary Malignancy_Breast
B35z000 Malignant neoplasm of ectopic site of male breast Primary Malignancy_Breast 95323.0 Diagnosis of Primary Malignancy_Breast
B35zz00 Malignant neoplasm of male breast NOS Primary Malignancy_Breast 48809.0 Diagnosis of Primary Malignancy_Breast
B36..00 Local recurrence of malignant tumour of breast Primary Malignancy_Breast 105488.0 Diagnosis of Primary Malignancy_Breast
B830.00 Carcinoma in situ of breast Primary Malignancy_Breast 7833.0 Diagnosis of Primary Malignancy_Breast
B830000 Lobular carcinoma in situ of breast Primary Malignancy_Breast 10387.0 Diagnosis of Primary Malignancy_Breast
B830100 Intraductal carcinoma in situ of breast Primary Malignancy_Breast 18694.0 Diagnosis of Primary Malignancy_Breast
BB91.00 [M]Infiltrating duct carcinoma Primary Malignancy_Breast 8351.0 Diagnosis of Primary Malignancy_Breast
BB91.11 [M]Duct carcinoma NOS Primary Malignancy_Breast 21833.0 Diagnosis of Primary Malignancy_Breast
BB91000 [M]Intraductal papillary adenocarcinoma with invasion Primary Malignancy_Breast 30189.0 Diagnosis of Primary Malignancy_Breast
BB91100 [M]Infiltrating duct and lobular carcinoma Primary Malignancy_Breast 39760.0 Diagnosis of Primary Malignancy_Breast
BB92.00 [M]Comedocarcinoma, noninfiltrating Primary Malignancy_Breast 62871.0 Diagnosis of Primary Malignancy_Breast
BB93.00 [M]Comedocarcinoma NOS Primary Malignancy_Breast 58131.0 Diagnosis of Primary Malignancy_Breast
BB94.00 [M]Juvenile breast carcinoma Primary Malignancy_Breast 40359.0 Diagnosis of Primary Malignancy_Breast
BB94.11 [M]Secretory breast carcinoma Primary Malignancy_Breast 67701.0 Diagnosis of Primary Malignancy_Breast
BB96.00 [M]Noninfiltrating intraductal papillary adenocarcinoma Primary Malignancy_Breast 102593.0 Diagnosis of Primary Malignancy_Breast
BB9J.00 [M]Paget's disease, mammary Primary Malignancy_Breast 12300.0 Diagnosis of Primary Malignancy_Breast
BB9J.11 [M]Paget's disease, breast Primary Malignancy_Breast 60803.0 Diagnosis of Primary Malignancy_Breast
BB9K.00 [M]Paget's disease and infiltrating breast duct carcinoma Primary Malignancy_Breast 42542.0 Diagnosis of Primary Malignancy_Breast
BB9K000 [M]Paget's disease and intraductal carcinoma of breast Primary Malignancy_Breast 12480.0 Diagnosis of Primary Malignancy_Breast
BB9M.00 [M]Intracystic carcinoma NOS Primary Malignancy_Breast 3969.0 Diagnosis of Primary Malignancy_Breast
Byu6.00 [X]Malignant neoplasm of breast Primary Malignancy_Breast 12499.0 Diagnosis of Primary Malignancy_Breast
ByuFG00 [X]Other carcinoma in situ of breast Primary Malignancy_Breast 53803.0 Diagnosis of Primary Malignancy_Breast
ZV10300 [V]Personal history of malignant neoplasm of breast Primary Malignancy_Breast 16639.0 History of Primary Malignancy_Breast
Rows: 45
Code Description Disease ReadcodeDescr Readcode
102593.0 Diagnosis of Primary Malignancy_Breast Primary Malignancy_Breast [M]Noninfiltrating intraductal papillary adenocarcinoma BB96.00
10387.0 Diagnosis of Primary Malignancy_Breast Primary Malignancy_Breast Lobular carcinoma in situ of breast B830000
105488.0 Diagnosis of Primary Malignancy_Breast Primary Malignancy_Breast Local recurrence of malignant tumour of breast B36..00
12300.0 Diagnosis of Primary Malignancy_Breast Primary Malignancy_Breast [M]Paget's disease, mammary BB9J.00
12480.0 Diagnosis of Primary Malignancy_Breast Primary Malignancy_Breast [M]Paget's disease and intraductal carcinoma of breast BB9K000
12499.0 Diagnosis of Primary Malignancy_Breast Primary Malignancy_Breast [X]Malignant neoplasm of breast Byu6.00
16639.0 History of Primary Malignancy_Breast Primary Malignancy_Breast [V]Personal history of malignant neoplasm of breast ZV10300
18694.0 Diagnosis of Primary Malignancy_Breast Primary Malignancy_Breast Intraductal carcinoma in situ of breast B830100
19423.0 Diagnosis of Primary Malignancy_Breast Primary Malignancy_Breast Malignant neoplasm of male breast B35..00
20685.0 Diagnosis of Primary Malignancy_Breast Primary Malignancy_Breast Malignant neoplasm of axillary tail of female breast B346.00
21833.0 Diagnosis of Primary Malignancy_Breast Primary Malignancy_Breast [M]Duct carcinoma NOS BB91.11
23380.0 Diagnosis of Primary Malignancy_Breast Primary Malignancy_Breast Malignant neoplasm of nipple of female breast B340000
23399.0 Diagnosis of Primary Malignancy_Breast Primary Malignancy_Breast Malignant neoplasm of upper-outer quadrant of female breast B344.00
26853.0 Diagnosis of Primary Malignancy_Breast Primary Malignancy_Breast Malignant neoplasm of nipple and areola of female breast B340.00
29826.0 Diagnosis of Primary Malignancy_Breast Primary Malignancy_Breast Malignant neoplasm of upper-inner quadrant of female breast B342.00
30189.0 Diagnosis of Primary Malignancy_Breast Primary Malignancy_Breast [M]Intraductal papillary adenocarcinoma with invasion BB91000
31546.0 Diagnosis of Primary Malignancy_Breast Primary Malignancy_Breast Malignant neoplasm of central part of female breast B341.00
348.0 Diagnosis of Primary Malignancy_Breast Primary Malignancy_Breast Ca female breast B34..11
38475.0 Diagnosis of Primary Malignancy_Breast Primary Malignancy_Breast Malignant neoplasm of other site of female breast NOS B34yz00
3968.0 Diagnosis of Primary Malignancy_Breast Primary Malignancy_Breast Malignant neoplasm of female breast B34..00
3969.0 Diagnosis of Primary Malignancy_Breast Primary Malignancy_Breast [M]Intracystic carcinoma NOS BB9M.00
39760.0 Diagnosis of Primary Malignancy_Breast Primary Malignancy_Breast [M]Infiltrating duct and lobular carcinoma BB91100
40359.0 Diagnosis of Primary Malignancy_Breast Primary Malignancy_Breast [M]Juvenile breast carcinoma BB94.00
42070.0 Diagnosis of Primary Malignancy_Breast Primary Malignancy_Breast Malignant neoplasm of lower-outer quadrant of female breast B345.00
42542.0 Diagnosis of Primary Malignancy_Breast Primary Malignancy_Breast [M]Paget's disease and infiltrating breast duct carcinoma BB9K.00
45222.0 Diagnosis of Primary Malignancy_Breast Primary Malignancy_Breast Malignant neoplasm of lower-inner quadrant of female breast B343.00
48809.0 Diagnosis of Primary Malignancy_Breast Primary Malignancy_Breast Malignant neoplasm of male breast NOS B35zz00
49148.0 Diagnosis of Primary Malignancy_Breast Primary Malignancy_Breast Malignant neoplasm, overlapping lesion of breast B347.00
53803.0 Diagnosis of Primary Malignancy_Breast Primary Malignancy_Breast [X]Other carcinoma in situ of breast ByuFG00
54202.0 Diagnosis of Primary Malignancy_Breast Primary Malignancy_Breast Malignant neoplasm of other site of male breast B35z.00
54494.0 Diagnosis of Primary Malignancy_Breast Primary Malignancy_Breast Malignant neoplasm of nipple and areola of male breast B350.00
56715.0 Diagnosis of Primary Malignancy_Breast Primary Malignancy_Breast Malignant neoplasm of other site of female breast B34y.00
58131.0 Diagnosis of Primary Malignancy_Breast Primary Malignancy_Breast [M]Comedocarcinoma NOS BB93.00
59831.0 Diagnosis of Primary Malignancy_Breast Primary Malignancy_Breast Malignant neoplasm of nipple or areola of female breast NOS B340z00
60803.0 Diagnosis of Primary Malignancy_Breast Primary Malignancy_Breast [M]Paget's disease, breast BB9J.11
62871.0 Diagnosis of Primary Malignancy_Breast Primary Malignancy_Breast [M]Comedocarcinoma, noninfiltrating BB92.00
64686.0 Diagnosis of Primary Malignancy_Breast Primary Malignancy_Breast Malignant neoplasm of areola of female breast B340100
67701.0 Diagnosis of Primary Malignancy_Breast Primary Malignancy_Breast [M]Secretory breast carcinoma BB94.11
67884.0 Diagnosis of Primary Malignancy_Breast Primary Malignancy_Breast Malignant neoplasm of areola of male breast B350100
68480.0 Diagnosis of Primary Malignancy_Breast Primary Malignancy_Breast Malignant neoplasm of nipple of male breast B350000
7833.0 Diagnosis of Primary Malignancy_Breast Primary Malignancy_Breast Carcinoma in situ of breast B830.00
8351.0 Diagnosis of Primary Malignancy_Breast Primary Malignancy_Breast [M]Infiltrating duct carcinoma BB91.00
9470.0 Diagnosis of Primary Malignancy_Breast Primary Malignancy_Breast Malignant neoplasm of female breast NOS B34z.00
95057.0 Diagnosis of Primary Malignancy_Breast Primary Malignancy_Breast Malignant neoplasm of ectopic site of female breast B34y000
95323.0 Diagnosis of Primary Malignancy_Breast Primary Malignancy_Breast Malignant neoplasm of ectopic site of male breast B35z000
Rows: 2
Code Description Disease Category
C50 Malignant neoplasm of breast Primary Malignancy_Breast Diagnosis of Primary Malignancy_Breast
D05 Carcinoma in situ of breast Primary Malignancy_Breast Diagnosis of Primary Malignancy_Breast

API

To Export Phenotype Details:

Format API
XML site_root/api/v1/public/phenotypes/PH252/version/504/detail/?format=xml
JSON site_root/api/v1/public/phenotypes/PH252/version/504/detail/?format=json
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get details of phenotype

details = get_phenotype_detail_by_version('PH252', '504', api_client=client)

To Export Phenotype Code List:

Format API
XML site_root/api/v1/public/phenotypes/PH252/version/504/export/codes/?format=xml
JSON site_root/api/v1/public/phenotypes/PH252/version/504/export/codes/?format=json
CSV site_root/phenotypes/PH252/version/504/export/codes/
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get codelists of phenotype

codelists = get_phenotype_code_list('PH252', '504', api_client=client)

Version History

Version
ID
Name Owner Publish date
504 Primary Malignancy_Breast ieuan.scanlon 2021-10-06 currently shown

Export - export all codes into a csv file/JSON/XML for the current phenotype version.

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