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Primary Malignancy_Cervical

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

ID
PH253
Version ID
506
Type
Disease or Syndrome
Valid event data range
01/01/1999 - 01/07/2016
Sex
♀  Female ♂  Male
Agreement Date
2019-05-20
Coding system
Read codes v2 ICD10 codes Med codes
Collections
CALIBER Phenotype Library
Tags
No tags

Definition

At the specified date, a patient is defined as having had Primary Malignancy Cervical IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Primary care

  1. Primary Malignancy_Cervical diagnosis or history of diagnosis during a consultation

OR Secondary care

  1. ALL diagnoses of Primary Malignancy_Cervical or history of diagnosis during a hospitalization

Implementation


Publications

  • Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

Rows: 14
Code Description Disease Medcode Category
B41..00 Malignant neoplasm of cervix uteri Primary Malignancy_Cervical 2747.0 Diagnosis of Primary Malignancy_Cervical
B41..11 Cervical carcinoma (uterus) Primary Malignancy_Cervical 3230.0 Diagnosis of Primary Malignancy_Cervical
B410.00 Malignant neoplasm of endocervix Primary Malignancy_Cervical 48820.0 Diagnosis of Primary Malignancy_Cervical
B410000 Malignant neoplasm of endocervical canal Primary Malignancy_Cervical 57235.0 Diagnosis of Primary Malignancy_Cervical
B410100 Malignant neoplasm of endocervical gland Primary Malignancy_Cervical 53103.0 Diagnosis of Primary Malignancy_Cervical
B410z00 Malignant neoplasm of endocervix NOS Primary Malignancy_Cervical 50285.0 Diagnosis of Primary Malignancy_Cervical
B411.00 Malignant neoplasm of exocervix Primary Malignancy_Cervical 50297.0 Diagnosis of Primary Malignancy_Cervical
B412.00 Malignant neoplasm, overlapping lesion of cervix uteri Primary Malignancy_Cervical 58094.0 Diagnosis of Primary Malignancy_Cervical
B41y.00 Malignant neoplasm of other site of cervix Primary Malignancy_Cervical 32955.0 Diagnosis of Primary Malignancy_Cervical
B41y000 Malignant neoplasm of cervical stump Primary Malignancy_Cervical 95505.0 Diagnosis of Primary Malignancy_Cervical
B41y100 Malignant neoplasm of squamocolumnar junction of cervix Primary Malignancy_Cervical 57719.0 Diagnosis of Primary Malignancy_Cervical
B41yz00 Malignant neoplasm of other site of cervix NOS Primary Malignancy_Cervical 43435.0 Diagnosis of Primary Malignancy_Cervical
B41z.00 Malignant neoplasm of cervix uteri NOS Primary Malignancy_Cervical 28311.0 Diagnosis of Primary Malignancy_Cervical
ZV10411 [V]Personal history of malignant neoplasm of cervix uteri Primary Malignancy_Cervical 23936.0 History of Primary Malignancy_Cervical
Rows: 14
Code Description Disease ReadcodeDescr Readcode
23936.0 History of Primary Malignancy_Cervical Primary Malignancy_Cervical [V]Personal history of malignant neoplasm of cervix uteri ZV10411
2747.0 Diagnosis of Primary Malignancy_Cervical Primary Malignancy_Cervical Malignant neoplasm of cervix uteri B41..00
28311.0 Diagnosis of Primary Malignancy_Cervical Primary Malignancy_Cervical Malignant neoplasm of cervix uteri NOS B41z.00
3230.0 Diagnosis of Primary Malignancy_Cervical Primary Malignancy_Cervical Cervical carcinoma (uterus) B41..11
32955.0 Diagnosis of Primary Malignancy_Cervical Primary Malignancy_Cervical Malignant neoplasm of other site of cervix B41y.00
43435.0 Diagnosis of Primary Malignancy_Cervical Primary Malignancy_Cervical Malignant neoplasm of other site of cervix NOS B41yz00
48820.0 Diagnosis of Primary Malignancy_Cervical Primary Malignancy_Cervical Malignant neoplasm of endocervix B410.00
50285.0 Diagnosis of Primary Malignancy_Cervical Primary Malignancy_Cervical Malignant neoplasm of endocervix NOS B410z00
50297.0 Diagnosis of Primary Malignancy_Cervical Primary Malignancy_Cervical Malignant neoplasm of exocervix B411.00
53103.0 Diagnosis of Primary Malignancy_Cervical Primary Malignancy_Cervical Malignant neoplasm of endocervical gland B410100
57235.0 Diagnosis of Primary Malignancy_Cervical Primary Malignancy_Cervical Malignant neoplasm of endocervical canal B410000
57719.0 Diagnosis of Primary Malignancy_Cervical Primary Malignancy_Cervical Malignant neoplasm of squamocolumnar junction of cervix B41y100
58094.0 Diagnosis of Primary Malignancy_Cervical Primary Malignancy_Cervical Malignant neoplasm, overlapping lesion of cervix uteri B412.00
95505.0 Diagnosis of Primary Malignancy_Cervical Primary Malignancy_Cervical Malignant neoplasm of cervical stump B41y000
Rows: 1
Code Description Disease Category
C53 Malignant neoplasm of cervix uteri Primary Malignancy_Cervical Diagnosis of Primary Malignancy_Cervical

API

To Export Phenotype Details:

Format API
XML site_root/api/v1/public/phenotypes/PH253/version/506/detail/?format=xml
JSON site_root/api/v1/public/phenotypes/PH253/version/506/detail/?format=json
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get details of phenotype

details = get_phenotype_detail_by_version('PH253', '506', api_client=client)

To Export Phenotype Code List:

Format API
XML site_root/api/v1/public/phenotypes/PH253/version/506/export/codes/?format=xml
JSON site_root/api/v1/public/phenotypes/PH253/version/506/export/codes/?format=json
CSV site_root/phenotypes/PH253/version/506/export/codes/
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get codelists of phenotype

codelists = get_phenotype_code_list('PH253', '506', api_client=client)

Version History

Version
ID
Name Owner Publish date
506 Primary Malignancy_Cervical ieuan.scanlon 2021-10-06 currently shown

Export - export all codes into a csv file/JSON/XML for the current phenotype version.

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