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Primary Malignancy_Kidney and Ureter

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

Type
Disease or Syndrome
ID
PH254
Version ID
508
Valid event data range
01/01/1999 - 01/07/2016
Sex
Female, Male
Agreement Date
2019-05-20
Coding system
Read codes v2 ICD10 codes Med codes
Tags /Collections
CALIBER Phenotype Library

Definition

At the specified date, a patient is defined as having had Primary Malignancy Kidney and ureter IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Primary care

  1. Primary Malignancy_Kidney and ureter diagnosis or history of diagnosis during a consultation

OR Secondary care

  1. ALL diagnoses of Primary Malignancy_Kidney and ureter or history of diagnosis during a hospitalization

Implementation


Publications

  • Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

Rows: 13
Code Description Disease Medcode Category
B4A..11 Renal malignant neoplasm Primary Malignancy_Kidney and Ureter 18712.0 Diagnosis of Primary Malignancy_Kidney and Ureter
B4A0.00 Malignant neoplasm of kidney parenchyma Primary Malignancy_Kidney and Ureter 1599.0 Diagnosis of Primary Malignancy_Kidney and Ureter
B4A0000 Hypernephroma Primary Malignancy_Kidney and Ureter 7978.0 Diagnosis of Primary Malignancy_Kidney and Ureter
B4A1.00 Malignant neoplasm of renal pelvis Primary Malignancy_Kidney and Ureter 12389.0 Diagnosis of Primary Malignancy_Kidney and Ureter
B4A1000 Malignant neoplasm of renal calyces Primary Malignancy_Kidney and Ureter 27540.0 Diagnosis of Primary Malignancy_Kidney and Ureter
B4A1100 Malignant neoplasm of ureteropelvic junction Primary Malignancy_Kidney and Ureter 101608.0 Diagnosis of Primary Malignancy_Kidney and Ureter
B4A1z00 Malignant neoplasm of renal pelvis NOS Primary Malignancy_Kidney and Ureter 54184.0 Diagnosis of Primary Malignancy_Kidney and Ureter
B4A2.00 Malignant neoplasm of ureter Primary Malignancy_Kidney and Ureter 15223.0 Diagnosis of Primary Malignancy_Kidney and Ureter
BB5a000 [M]Renal cell carcinoma Primary Malignancy_Kidney and Ureter 10668.0 Diagnosis of Primary Malignancy_Kidney and Ureter
BB5a011 [M]Grawitz tumour Primary Malignancy_Kidney and Ureter 52266.0 Diagnosis of Primary Malignancy_Kidney and Ureter
BB5a012 [M]Hypernephroma Primary Malignancy_Kidney and Ureter 15419.0 Diagnosis of Primary Malignancy_Kidney and Ureter
ZV10512 [V]Personal history of malignant neoplasm of kidney Primary Malignancy_Kidney and Ureter 47683.0 History of Primary Malignancy_Kidney and Ureter
ZV10513 [V]Personal history of malignant neoplasm of kidney Primary Malignancy_Kidney and Ureter 28881.0 History of Primary Malignancy_Kidney and Ureter
Rows: 13
Code Description Disease ReadcodeDescr Readcode
101608.0 Diagnosis of Primary Malignancy_Kidney and Ureter Primary Malignancy_Kidney and Ureter Malignant neoplasm of ureteropelvic junction B4A1100
10668.0 Diagnosis of Primary Malignancy_Kidney and Ureter Primary Malignancy_Kidney and Ureter [M]Renal cell carcinoma BB5a000
12389.0 Diagnosis of Primary Malignancy_Kidney and Ureter Primary Malignancy_Kidney and Ureter Malignant neoplasm of renal pelvis B4A1.00
15223.0 Diagnosis of Primary Malignancy_Kidney and Ureter Primary Malignancy_Kidney and Ureter Malignant neoplasm of ureter B4A2.00
15419.0 Diagnosis of Primary Malignancy_Kidney and Ureter Primary Malignancy_Kidney and Ureter [M]Hypernephroma BB5a012
1599.0 Diagnosis of Primary Malignancy_Kidney and Ureter Primary Malignancy_Kidney and Ureter Malignant neoplasm of kidney parenchyma B4A0.00
18712.0 Diagnosis of Primary Malignancy_Kidney and Ureter Primary Malignancy_Kidney and Ureter Renal malignant neoplasm B4A..11
27540.0 Diagnosis of Primary Malignancy_Kidney and Ureter Primary Malignancy_Kidney and Ureter Malignant neoplasm of renal calyces B4A1000
28881.0 History of Primary Malignancy_Kidney and Ureter Primary Malignancy_Kidney and Ureter [V]Personal history of malignant neoplasm of kidney ZV10513
47683.0 History of Primary Malignancy_Kidney and Ureter Primary Malignancy_Kidney and Ureter [V]Personal history of malignant neoplasm of kidney ZV10512
52266.0 Diagnosis of Primary Malignancy_Kidney and Ureter Primary Malignancy_Kidney and Ureter [M]Grawitz tumour BB5a011
54184.0 Diagnosis of Primary Malignancy_Kidney and Ureter Primary Malignancy_Kidney and Ureter Malignant neoplasm of renal pelvis NOS B4A1z00
7978.0 Diagnosis of Primary Malignancy_Kidney and Ureter Primary Malignancy_Kidney and Ureter Hypernephroma B4A0000
Rows: 3
Code Description Disease Category
C64 Malignant neoplasm of kidney, except renal pelvis Primary Malignancy_Kidney and Ureter Diagnosis of Primary Malignancy_Kidney and Ureter
C65 Malignant neoplasm of renal pelvis Primary Malignancy_Kidney and Ureter Diagnosis of Primary Malignancy_Kidney and Ureter
C66 Malignant neoplasm of ureter Primary Malignancy_Kidney and Ureter Diagnosis of Primary Malignancy_Kidney and Ureter

API

To Export Phenotype Details:

Format API
XML site_root/api/v1/public/phenotypes/PH254/version/508/detail/?format=xml
JSON site_root/api/v1/public/phenotypes/PH254/version/508/detail/?format=json
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get details of phenotype

details = get_phenotype_detail_by_version('PH254', '508', api_client=client)

To Export Phenotype Code List:

Format API
XML site_root/api/v1/public/phenotypes/PH254/version/508/export/codes/?format=xml
JSON site_root/api/v1/public/phenotypes/PH254/version/508/export/codes/?format=json
CSV site_root/phenotypes/PH254/version/508/export/codes/
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get codelists of phenotype

codelists = get_phenotype_code_list('PH254', '508', api_client=client)

Version History

Version
ID
Name Owner Publish date
508 Primary Malignancy_Kidney and Ureter ieuan.scanlon 2021-10-06 currently shown

Export - export all codes into a csv file/JSON/XML for the current phenotype version.

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