Phenotype Library | phenotype: Primary Malignancy

Primary Malignancy_Liver

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

PH255

Version ID

510

Type

Disease or Syndrome

Data Sources

CPRD GOLD , HES Admitted Patient Care data for CPRD GOLD

Valid event data range

01/01/1999 - 01/07/2016

Sex

♀ Female ♂ Male

Agreement Date

2019-05-20

Coding system

Read codes v2 ICD10 codes Med codes

Collections

CALIBER Phenotype Library

Definition

At the specified date, a patient is defined as having had Primary Malignancy Liver IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Primary care

Primary Malignancy_Liver diagnosis or history of diagnosis during a consultation

OR Secondary care

ALL diagnoses of Primary Malignancy_Liver or history of diagnosis during a hospitalization

Implementation

PhenoFlow Implementation:

https://kclhi.org/phenoflow/phenotype/download/743

Publications

Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

CSV

JSON

XML

Expand All / Collapse All

C1409/3957 Primary Malignancy_Liver - Primary care - Read codes v2

Rows: 16

Code	Description	Disease	Medcode	Category
B150.00	Primary malignant neoplasm of liver	Primary Malignancy_Liver	25535.0	Diagnosis of Primary Malignancy_Liver
B150000	Primary carcinoma of liver	Primary Malignancy_Liver	16126.0	Diagnosis of Primary Malignancy_Liver
B150100	Hepatoblastoma of liver	Primary Malignancy_Liver	31210.0	Diagnosis of Primary Malignancy_Liver
B150200	Primary angiosarcoma of liver	Primary Malignancy_Liver	68410.0	Diagnosis of Primary Malignancy_Liver
B150300	Hepatocellular carcinoma	Primary Malignancy_Liver	22187.0	Diagnosis of Primary Malignancy_Liver
B150z00	Primary malignant neoplasm of liver NOS	Primary Malignancy_Liver	44399.0	Diagnosis of Primary Malignancy_Liver
B152.00	Malignant neoplasm of liver unspecified	Primary Malignancy_Liver	26393.0	Diagnosis of Primary Malignancy_Liver
BB5D500	[M]Hepatocellular carcinoma NOS	Primary Malignancy_Liver	40240.0	Diagnosis of Primary Malignancy_Liver
BB5D511	[M]Hepatoma NOS	Primary Malignancy_Liver	20234.0	Diagnosis of Primary Malignancy_Liver
BB5D512	[M]Hepatoma, malignant	Primary Malignancy_Liver	26814.0	Diagnosis of Primary Malignancy_Liver
BB5D513	[M]Liver cell carcinoma	Primary Malignancy_Liver	25641.0	Diagnosis of Primary Malignancy_Liver
BB5D700	[M]Combined hepatocellular carcinoma and cholangiocarcinoma	Primary Malignancy_Liver	107299.0	Diagnosis of Primary Malignancy_Liver
BB5D711	[M]Hepatocholangiocarcinoma	Primary Malignancy_Liver	110147.0	Diagnosis of Primary Malignancy_Liver
BB5D800	[M]Hepatocellular carcinoma, fibrolamellar	Primary Malignancy_Liver	46771.0	Diagnosis of Primary Malignancy_Liver
Byu1100	[X]Other specified carcinomas of liver	Primary Malignancy_Liver	43490.0	Diagnosis of Primary Malignancy_Liver
ZV10015	[V]Personal history of malignant neoplasm of liver	Primary Malignancy_Liver	58177.0	History of Primary Malignancy_Liver

C1410/3959 Primary Malignancy_Liver - Primary care - Med codes

Rows: 16

Code	Description	Disease	ReadcodeDescr	Readcode
107299.0	Diagnosis of Primary Malignancy_Liver	Primary Malignancy_Liver	[M]Combined hepatocellular carcinoma and cholangiocarcinoma	BB5D700
110147.0	Diagnosis of Primary Malignancy_Liver	Primary Malignancy_Liver	[M]Hepatocholangiocarcinoma	BB5D711
16126.0	Diagnosis of Primary Malignancy_Liver	Primary Malignancy_Liver	Primary carcinoma of liver	B150000
20234.0	Diagnosis of Primary Malignancy_Liver	Primary Malignancy_Liver	[M]Hepatoma NOS	BB5D511
22187.0	Diagnosis of Primary Malignancy_Liver	Primary Malignancy_Liver	Hepatocellular carcinoma	B150300
25535.0	Diagnosis of Primary Malignancy_Liver	Primary Malignancy_Liver	Primary malignant neoplasm of liver	B150.00
25641.0	Diagnosis of Primary Malignancy_Liver	Primary Malignancy_Liver	[M]Liver cell carcinoma	BB5D513
26393.0	Diagnosis of Primary Malignancy_Liver	Primary Malignancy_Liver	Malignant neoplasm of liver unspecified	B152.00
26814.0	Diagnosis of Primary Malignancy_Liver	Primary Malignancy_Liver	[M]Hepatoma, malignant	BB5D512
31210.0	Diagnosis of Primary Malignancy_Liver	Primary Malignancy_Liver	Hepatoblastoma of liver	B150100
40240.0	Diagnosis of Primary Malignancy_Liver	Primary Malignancy_Liver	[M]Hepatocellular carcinoma NOS	BB5D500
43490.0	Diagnosis of Primary Malignancy_Liver	Primary Malignancy_Liver	[X]Other specified carcinomas of liver	Byu1100
44399.0	Diagnosis of Primary Malignancy_Liver	Primary Malignancy_Liver	Primary malignant neoplasm of liver NOS	B150z00
46771.0	Diagnosis of Primary Malignancy_Liver	Primary Malignancy_Liver	[M]Hepatocellular carcinoma, fibrolamellar	BB5D800
58177.0	History of Primary Malignancy_Liver	Primary Malignancy_Liver	[V]Personal history of malignant neoplasm of liver	ZV10015
68410.0	Diagnosis of Primary Malignancy_Liver	Primary Malignancy_Liver	Primary angiosarcoma of liver	B150200

C1411/3961 Primary Malignancy_Liver - Secondary care - Diagnoses - ICD10 codes

Rows: 6

Code	Description	Disease	Category
C22.0	Malignant neoplasm: Liver cell carcinoma	Primary Malignancy_Liver	Diagnosis of Primary Malignancy_Liver
C22.2	Malignant neoplasm: Hepatoblastoma	Primary Malignancy_Liver	Diagnosis of Primary Malignancy_Liver
C22.3	Malignant neoplasm: Angiosarcoma of liver	Primary Malignancy_Liver	Diagnosis of Primary Malignancy_Liver
C22.4	Malignant neoplasm: Other sarcomas of liver	Primary Malignancy_Liver	Diagnosis of Primary Malignancy_Liver
C22.7	Malignant neoplasm: Other specified carcinomas of liver	Primary Malignancy_Liver	Diagnosis of Primary Malignancy_Liver
C22.9	Malignant neoplasm: Liver, unspecified	Primary Malignancy_Liver	Diagnosis of Primary Malignancy_Liver

API

To Export Phenotype Details:

Format	API
XML	site_root/api/v1/public/phenotypes/PH255/version/510/detail/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH255/version/510/detail/?format=json
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get details of phenotype details = get_phenotype_detail_by_version('PH255', '510', api_client=client)`

To Export Phenotype Code List:

Format	API
XML	site_root/api/v1/public/phenotypes/PH255/version/510/export/codes/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH255/version/510/export/codes/?format=json
CSV	site_root/phenotypes/PH255/version/510/export/codes/
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get codelists of phenotype codelists = get_phenotype_code_list('PH255', '510', api_client=client)`

Version History

Version ID	Name	Owner	Publish date
510	Primary Malignancy_Liver	ieuan.scanlon	2021-10-06	currently shown