Phenotypes > Primary Malignancy_Lung and trachea

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Primary Malignancy_Lung and trachea

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

ID
PH256
Version ID
512
Type
Disease or Syndrome
Data Sources
CPRD GOLD , HES Admitted Patient Care data for CPRD GOLD
Valid event data range
01/01/1999 - 01/07/2016
Sex
♀  Female ♂  Male
Agreement Date
2019-05-20
Coding system
Read codes v2 ICD10 codes Med codes
Collections
CALIBER Phenotype Library
Tags
No tags

Definition

At the specified date, a patient is defined as having had Primary Malignancy Lung and trachea IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Primary care

  1. Primary Malignancy_Lung and trachea diagnosis or history of diagnosis during a consultation

OR Secondary care

  1. ALL diagnoses of Primary Malignancy_Lung and trachea or history of diagnosis during a hospitalization

Implementation


https://kclhi.org/phenoflow/phenotype/download/745

Publications

  • Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

Expand All  /  Collapse All
Rows: 33
Code Description Disease Medcode Category
B22..00 Malignant neoplasm of trachea, bronchus and lung Primary Malignancy_Lung and trachea 13243.0 Diagnosis of Primary Malignancy_Lung and trachea
B220.00 Malignant neoplasm of trachea Primary Malignancy_Lung and trachea 15221.0 Diagnosis of Primary Malignancy_Lung and trachea
B220100 Malignant neoplasm of mucosa of trachea Primary Malignancy_Lung and trachea 103946.0 Diagnosis of Primary Malignancy_Lung and trachea
B220z00 Malignant neoplasm of trachea NOS Primary Malignancy_Lung and trachea 37810.0 Diagnosis of Primary Malignancy_Lung and trachea
B221.00 Malignant neoplasm of main bronchus Primary Malignancy_Lung and trachea 12870.0 Diagnosis of Primary Malignancy_Lung and trachea
B221000 Malignant neoplasm of carina of bronchus Primary Malignancy_Lung and trachea 17391.0 Diagnosis of Primary Malignancy_Lung and trachea
B221100 Malignant neoplasm of hilus of lung Primary Malignancy_Lung and trachea 33444.0 Diagnosis of Primary Malignancy_Lung and trachea
B221z00 Malignant neoplasm of main bronchus NOS Primary Malignancy_Lung and trachea 21698.0 Diagnosis of Primary Malignancy_Lung and trachea
B222.00 Malignant neoplasm of upper lobe, bronchus or lung Primary Malignancy_Lung and trachea 10358.0 Diagnosis of Primary Malignancy_Lung and trachea
B222.11 Pancoast's syndrome Primary Malignancy_Lung and trachea 20170.0 Diagnosis of Primary Malignancy_Lung and trachea
B222000 Malignant neoplasm of upper lobe bronchus Primary Malignancy_Lung and trachea 31700.0 Diagnosis of Primary Malignancy_Lung and trachea
B222100 Malignant neoplasm of upper lobe of lung Primary Malignancy_Lung and trachea 25886.0 Diagnosis of Primary Malignancy_Lung and trachea
B222z00 Malignant neoplasm of upper lobe, bronchus or lung NOS Primary Malignancy_Lung and trachea 44169.0 Diagnosis of Primary Malignancy_Lung and trachea
B223.00 Malignant neoplasm of middle lobe, bronchus or lung Primary Malignancy_Lung and trachea 31268.0 Diagnosis of Primary Malignancy_Lung and trachea
B223000 Malignant neoplasm of middle lobe bronchus Primary Malignancy_Lung and trachea 41523.0 Diagnosis of Primary Malignancy_Lung and trachea
B223100 Malignant neoplasm of middle lobe of lung Primary Malignancy_Lung and trachea 39923.0 Diagnosis of Primary Malignancy_Lung and trachea
B223z00 Malignant neoplasm of middle lobe, bronchus or lung NOS Primary Malignancy_Lung and trachea 54134.0 Diagnosis of Primary Malignancy_Lung and trachea
B224.00 Malignant neoplasm of lower lobe, bronchus or lung Primary Malignancy_Lung and trachea 31188.0 Diagnosis of Primary Malignancy_Lung and trachea
B224000 Malignant neoplasm of lower lobe bronchus Primary Malignancy_Lung and trachea 18678.0 Diagnosis of Primary Malignancy_Lung and trachea
B224100 Malignant neoplasm of lower lobe of lung Primary Malignancy_Lung and trachea 12582.0 Diagnosis of Primary Malignancy_Lung and trachea
B224z00 Malignant neoplasm of lower lobe, bronchus or lung NOS Primary Malignancy_Lung and trachea 42566.0 Diagnosis of Primary Malignancy_Lung and trachea
B225.00 Malignant neoplasm of overlapping lesion of bronchus & lung Primary Malignancy_Lung and trachea 36371.0 Diagnosis of Primary Malignancy_Lung and trachea
B22y.00 Malignant neoplasm of other sites of bronchus or lung Primary Malignancy_Lung and trachea 38961.0 Diagnosis of Primary Malignancy_Lung and trachea
B22z.00 Malignant neoplasm of bronchus or lung NOS Primary Malignancy_Lung and trachea 3903.0 Diagnosis of Primary Malignancy_Lung and trachea
B22z.11 Lung cancer Primary Malignancy_Lung and trachea 2587.0 Diagnosis of Primary Malignancy_Lung and trachea
BB5S200 [M]Bronchiolo-alveolar adenocarcinoma Primary Malignancy_Lung and trachea 34015.0 Diagnosis of Primary Malignancy_Lung and trachea
BB5S211 [M]Alveolar cell carcinoma Primary Malignancy_Lung and trachea 36530.0 Diagnosis of Primary Malignancy_Lung and trachea
BB5S212 [M]Bronchiolar carcinoma Primary Malignancy_Lung and trachea 16723.0 Diagnosis of Primary Malignancy_Lung and trachea
BB5S400 [M]Alveolar adenocarcinoma Primary Malignancy_Lung and trachea 57802.0 Diagnosis of Primary Malignancy_Lung and trachea
Byu2000 [X]Malignant neoplasm of bronchus or lung, unspecified Primary Malignancy_Lung and trachea 40595.0 Diagnosis of Primary Malignancy_Lung and trachea
ZV10100 [V]Personal history of malig neop of trachea/bronchus/lung Primary Malignancy_Lung and trachea 49289.0 History of Primary Malignancy_Lung and trachea
ZV10111 [V]Personal history of malignant neoplasm of bronchus Primary Malignancy_Lung and trachea 32246.0 History of Primary Malignancy_Lung and trachea
ZV10112 [V]Personal history of malignant neoplasm of lung Primary Malignancy_Lung and trachea 29284.0 History of Primary Malignancy_Lung and trachea
Rows: 33
Code Description Disease ReadcodeDescr Readcode
10358.0 Diagnosis of Primary Malignancy_Lung and trachea Primary Malignancy_Lung and trachea Malignant neoplasm of upper lobe, bronchus or lung B222.00
103946.0 Diagnosis of Primary Malignancy_Lung and trachea Primary Malignancy_Lung and trachea Malignant neoplasm of mucosa of trachea B220100
12582.0 Diagnosis of Primary Malignancy_Lung and trachea Primary Malignancy_Lung and trachea Malignant neoplasm of lower lobe of lung B224100
12870.0 Diagnosis of Primary Malignancy_Lung and trachea Primary Malignancy_Lung and trachea Malignant neoplasm of main bronchus B221.00
13243.0 Diagnosis of Primary Malignancy_Lung and trachea Primary Malignancy_Lung and trachea Malignant neoplasm of trachea, bronchus and lung B22..00
15221.0 Diagnosis of Primary Malignancy_Lung and trachea Primary Malignancy_Lung and trachea Malignant neoplasm of trachea B220.00
16723.0 Diagnosis of Primary Malignancy_Lung and trachea Primary Malignancy_Lung and trachea [M]Bronchiolar carcinoma BB5S212
17391.0 Diagnosis of Primary Malignancy_Lung and trachea Primary Malignancy_Lung and trachea Malignant neoplasm of carina of bronchus B221000
18678.0 Diagnosis of Primary Malignancy_Lung and trachea Primary Malignancy_Lung and trachea Malignant neoplasm of lower lobe bronchus B224000
20170.0 Diagnosis of Primary Malignancy_Lung and trachea Primary Malignancy_Lung and trachea Pancoast's syndrome B222.11
21698.0 Diagnosis of Primary Malignancy_Lung and trachea Primary Malignancy_Lung and trachea Malignant neoplasm of main bronchus NOS B221z00
2587.0 Diagnosis of Primary Malignancy_Lung and trachea Primary Malignancy_Lung and trachea Lung cancer B22z.11
25886.0 Diagnosis of Primary Malignancy_Lung and trachea Primary Malignancy_Lung and trachea Malignant neoplasm of upper lobe of lung B222100
29284.0 History of Primary Malignancy_Lung and trachea Primary Malignancy_Lung and trachea [V]Personal history of malignant neoplasm of lung ZV10112
31188.0 Diagnosis of Primary Malignancy_Lung and trachea Primary Malignancy_Lung and trachea Malignant neoplasm of lower lobe, bronchus or lung B224.00
31268.0 Diagnosis of Primary Malignancy_Lung and trachea Primary Malignancy_Lung and trachea Malignant neoplasm of middle lobe, bronchus or lung B223.00
31700.0 Diagnosis of Primary Malignancy_Lung and trachea Primary Malignancy_Lung and trachea Malignant neoplasm of upper lobe bronchus B222000
32246.0 History of Primary Malignancy_Lung and trachea Primary Malignancy_Lung and trachea [V]Personal history of malignant neoplasm of bronchus ZV10111
33444.0 Diagnosis of Primary Malignancy_Lung and trachea Primary Malignancy_Lung and trachea Malignant neoplasm of hilus of lung B221100
34015.0 Diagnosis of Primary Malignancy_Lung and trachea Primary Malignancy_Lung and trachea [M]Bronchiolo-alveolar adenocarcinoma BB5S200
36371.0 Diagnosis of Primary Malignancy_Lung and trachea Primary Malignancy_Lung and trachea Malignant neoplasm of overlapping lesion of bronchus & lung B225.00
36530.0 Diagnosis of Primary Malignancy_Lung and trachea Primary Malignancy_Lung and trachea [M]Alveolar cell carcinoma BB5S211
37810.0 Diagnosis of Primary Malignancy_Lung and trachea Primary Malignancy_Lung and trachea Malignant neoplasm of trachea NOS B220z00
38961.0 Diagnosis of Primary Malignancy_Lung and trachea Primary Malignancy_Lung and trachea Malignant neoplasm of other sites of bronchus or lung B22y.00
3903.0 Diagnosis of Primary Malignancy_Lung and trachea Primary Malignancy_Lung and trachea Malignant neoplasm of bronchus or lung NOS B22z.00
39923.0 Diagnosis of Primary Malignancy_Lung and trachea Primary Malignancy_Lung and trachea Malignant neoplasm of middle lobe of lung B223100
40595.0 Diagnosis of Primary Malignancy_Lung and trachea Primary Malignancy_Lung and trachea [X]Malignant neoplasm of bronchus or lung, unspecified Byu2000
41523.0 Diagnosis of Primary Malignancy_Lung and trachea Primary Malignancy_Lung and trachea Malignant neoplasm of middle lobe bronchus B223000
42566.0 Diagnosis of Primary Malignancy_Lung and trachea Primary Malignancy_Lung and trachea Malignant neoplasm of lower lobe, bronchus or lung NOS B224z00
44169.0 Diagnosis of Primary Malignancy_Lung and trachea Primary Malignancy_Lung and trachea Malignant neoplasm of upper lobe, bronchus or lung NOS B222z00
49289.0 History of Primary Malignancy_Lung and trachea Primary Malignancy_Lung and trachea [V]Personal history of malig neop of trachea/bronchus/lung ZV10100
54134.0 Diagnosis of Primary Malignancy_Lung and trachea Primary Malignancy_Lung and trachea Malignant neoplasm of middle lobe, bronchus or lung NOS B223z00
57802.0 Diagnosis of Primary Malignancy_Lung and trachea Primary Malignancy_Lung and trachea [M]Alveolar adenocarcinoma BB5S400
Rows: 2
Code Description Disease Category
C33 Malignant neoplasm of trachea Primary Malignancy_Lung and trachea Diagnosis of Primary Malignancy_Lung and trachea
C34 Malignant neoplasm of bronchus and lung Primary Malignancy_Lung and trachea Diagnosis of Primary Malignancy_Lung and trachea

API

To Export Phenotype Details:

Format API
XML site_root/api/v1/public/phenotypes/PH256/version/512/detail/?format=xml
JSON site_root/api/v1/public/phenotypes/PH256/version/512/detail/?format=json
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get details of phenotype

details = get_phenotype_detail_by_version('PH256', '512', api_client=client)

To Export Phenotype Code List:

Format API
XML site_root/api/v1/public/phenotypes/PH256/version/512/export/codes/?format=xml
JSON site_root/api/v1/public/phenotypes/PH256/version/512/export/codes/?format=json
CSV site_root/phenotypes/PH256/version/512/export/codes/
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get codelists of phenotype

codelists = get_phenotype_code_list('PH256', '512', api_client=client)

Version History

Version
ID		 Name Owner Publish date
512 Primary Malignancy_Lung and trachea ieuan.scanlon 2021-10-06 currently shown

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