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Primary Malignancy_Multiple independent sites

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

Type
Disease or Syndrome
ID
PH259
Version ID
518
Valid event data range
01/01/1999 - 01/07/2016
Sex
Female, Male
Agreement Date
2019-05-20
Coding system
Read codes v2 ICD10 codes Med codes
Tags /Collections
CALIBER Phenotype Library

Definition

At the specified date, a patient is defined as having had Primary Malignancy Multiple Independent Sites IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Primary care

  1. Primary Malignancy_Multiple Independent Sites diagnosis or history of diagnosis during a consultation

OR Secondary care

  1. ALL diagnoses of Primary Malignancy_Multiple Independent Sites or history of diagnosis during a hospitalization

Implementation


Publications

  • Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

Rows: 3
Code Description Disease Medcode Category
B592.00 Malignant neoplasms of independent (primary) multiple sites Primary Malignancy_Multiple independent sites 51352.0 Diagnosis of Primary Malignancy_Multiple independent sites
ByuE.00 [X]Malignant neoplasms/independent (primary) multiple sites Primary Malignancy_Multiple independent sites 63598.0 Diagnosis of Primary Malignancy_Multiple independent sites
ByuE000 [X]Malignant neoplasms/independent(primary)multiple sites Primary Malignancy_Multiple independent sites 64897.0 Diagnosis of Primary Malignancy_Multiple independent sites
Rows: 3
Code Description Disease ReadcodeDescr Readcode
51352.0 Diagnosis of Primary Malignancy_Multiple independent sites Primary Malignancy_Multiple independent sites Malignant neoplasms of independent (primary) multiple sites B592.00
63598.0 Diagnosis of Primary Malignancy_Multiple independent sites Primary Malignancy_Multiple independent sites [X]Malignant neoplasms/independent (primary) multiple sites ByuE.00
64897.0 Diagnosis of Primary Malignancy_Multiple independent sites Primary Malignancy_Multiple independent sites [X]Malignant neoplasms/independent(primary)multiple sites ByuE000
Rows: 1
Code Description Disease Category
C97 Malignant neoplasms of independent (primary) multiple sites Primary Malignancy_Multiple independent sites Diagnosis of Primary Malignancy_Multiple independent sites

API

To Export Phenotype Details:

Format API
XML site_root/api/v1/public/phenotypes/PH259/version/518/detail/?format=xml
JSON site_root/api/v1/public/phenotypes/PH259/version/518/detail/?format=json
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get details of phenotype

details = get_phenotype_detail_by_version('PH259', '518', api_client=client)

To Export Phenotype Code List:

Format API
XML site_root/api/v1/public/phenotypes/PH259/version/518/export/codes/?format=xml
JSON site_root/api/v1/public/phenotypes/PH259/version/518/export/codes/?format=json
CSV site_root/phenotypes/PH259/version/518/export/codes/
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get codelists of phenotype

codelists = get_phenotype_code_list('PH259', '518', api_client=client)

Version History

Version
ID
Name Owner Publish date
518 Primary Malignancy_Multiple independent sites ieuan.scanlon 2021-10-06 currently shown

Export - export all codes into a csv file/JSON/XML for the current phenotype version.

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