Primary Malignancy_Other Organs
Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A
PH262 / 524 Clinical-Coded Phenotype
Overview
Phenotype TypeDisease or syndromeSexBothValid Event Date Range01/01/1999 - 01/07/2016Coding SystemICD10 codesRead codes v2Med codesData SourcesCollectionsCALIBERPhenotype LibraryTagsNo dataDefinition
At the specified date, a patient is defined as having had Primary Malignancy Other organs IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:
Primary care
- Primary Malignancy Other organs diagnosis or history of diagnosis during a consultation
OR
- Primary Malignancy Other organs possible diagnosis during a consultation IF NO record satisfying criteria for Primary Malignancy of any other organ in this document OR Haematological Malignancy (Hodgkin Lymphoma, Non-Hodgkin Lymphoma, Multiple Myeloma, Leukaemia)
Secondary care
ALL diagnoses of Primary Malignancy Other organs or history of diagnosis during a hospitalization OR
ALL possible diagnosis of Primary Malignancy_Other organs during a hospitalization IF NO record satisfying criteria for Primary Malignancy of any other organ in this document OR Haematological Malignancy (Hodgkin Lymphoma, Non-Hodgkin Lymphoma, Multiple Myeloma, Leukaemia)
Implementation
Phenoflow IDImplementation
Clinical Code List
PUBLISHED - 346 Codes
PUBLISHED - 346 Codes
PUBLISHED - 43 Codes
Publication
Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3
(DOI:10.1016/S2589-7500(19)30012-3)
Citation Example
Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A. PH262 / 524 - Primary Malignancy_Other Organs. Phenotype Library [Online]. 06 October 2021. Available from: http://phenotypes.healthdatagateway.org/phenotypes/PH262/version/524/detail/. [Accessed 31 October 2024]
API
To Export Phenotype Details:
Format API JSON site_root/api/v1/phenotypes/PH262/version/524/detail/?format=json R Package library(ConceptLibraryClient)
# Connect to API
client = ConceptLibraryClient::Connection$new(public=TRUE)
# Get details of phenotype
phenotype_details = client$phenotypes$get_detail(
'PH262',
version_id=524
)Py Package from pyconceptlibraryclient import Client
# Connect to API
client = Client(public=True)
# Get codelist of phenotype
phenotype_codelist = client.phenotypes.get_detail(
'PH262',
version_id=524
)To Export Phenotype Code List:
Format API JSON site_root/api/v1/phenotypes/PH262/version/524/export/codes/?format=json CSV site_root/phenotypes/PH262/version/524/export/codes/ R Package library(ConceptLibraryClient)
# Connect to API
client = ConceptLibraryClient::Connection$new(public=TRUE)
# Get codelist of phenotype
phenotype_codelist = client$phenotypes$get_codelist(
'PH262',
version_id=524
)Py Package from pyconceptlibraryclient import Client
# Connect to API
client = Client(public=True)
# Get codelist of phenotype
phenotype_codelist = client.phenotypes.get_codelist(
'PH262',
version_id=524
)Version History