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Primary Malignancy_Ovarian

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

ID
PH263
Version ID
526
Type
Disease or Syndrome
Valid event data range
01/01/1999 - 01/07/2016
Sex
♀  Female ♂  Male
Agreement Date
2019-05-20
Coding system
Read codes v2 ICD10 codes Med codes
Collections
CALIBER Phenotype Library
Tags
No tags

Definition

At the specified date, a patient is defined as having had Primary Malignancy Ovarian IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Primary care

  1. Primary Malignancy_Ovarian diagnosis or history of diagnosis during a consultation

OR Secondary care

  1. ALL diagnoses of Primary Malignancy Ovarian or history of diagnosis during a hospitalization

Implementation


Publications

  • Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

Rows: 7
Code Description Disease Medcode Category
B440.00 Malignant neoplasm of ovary Primary Malignancy_Ovarian 7805.0 Diagnosis of Primary Malignancy_Ovarian
B440.11 Cancer of ovary Primary Malignancy_Ovarian 1986.0 Diagnosis of Primary Malignancy_Ovarian
BB5j200 [M]Endometrioid carcinoma Primary Malignancy_Ovarian 9447.0 Diagnosis of Primary Malignancy_Ovarian
BB5j500 [M]Endometrioid adenofibroma, malignant Primary Malignancy_Ovarian 103034.0 Diagnosis of Primary Malignancy_Ovarian
BBQA100 [M]Struma ovarii, malignant Primary Malignancy_Ovarian 71301.0 Diagnosis of Primary Malignancy_Ovarian
D212000 Anaemia in ovarian carcinoma Primary Malignancy_Ovarian 48145.0 History of Primary Malignancy_Ovarian
ZV10414 [V]Personal history of malignant neoplasm of ovary Primary Malignancy_Ovarian 52141.0 History of Primary Malignancy_Ovarian
Rows: 7
Code Description Disease ReadcodeDescr Readcode
103034.0 Diagnosis of Primary Malignancy_Ovarian Primary Malignancy_Ovarian [M]Endometrioid adenofibroma, malignant BB5j500
1986.0 Diagnosis of Primary Malignancy_Ovarian Primary Malignancy_Ovarian Cancer of ovary B440.11
48145.0 History of Primary Malignancy_Ovarian Primary Malignancy_Ovarian Anaemia in ovarian carcinoma D212000
52141.0 History of Primary Malignancy_Ovarian Primary Malignancy_Ovarian [V]Personal history of malignant neoplasm of ovary ZV10414
71301.0 Diagnosis of Primary Malignancy_Ovarian Primary Malignancy_Ovarian [M]Struma ovarii, malignant BBQA100
7805.0 Diagnosis of Primary Malignancy_Ovarian Primary Malignancy_Ovarian Malignant neoplasm of ovary B440.00
9447.0 Diagnosis of Primary Malignancy_Ovarian Primary Malignancy_Ovarian [M]Endometrioid carcinoma BB5j200
Rows: 1
Code Description Disease Category
C56 Malignant neoplasm of ovary Primary Malignancy_Ovarian Diagnosis of Primary Malignancy_Ovarian

API

To Export Phenotype Details:

Format API
XML site_root/api/v1/public/phenotypes/PH263/version/526/detail/?format=xml
JSON site_root/api/v1/public/phenotypes/PH263/version/526/detail/?format=json
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get details of phenotype

details = get_phenotype_detail_by_version('PH263', '526', api_client=client)

To Export Phenotype Code List:

Format API
XML site_root/api/v1/public/phenotypes/PH263/version/526/export/codes/?format=xml
JSON site_root/api/v1/public/phenotypes/PH263/version/526/export/codes/?format=json
CSV site_root/phenotypes/PH263/version/526/export/codes/
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get codelists of phenotype

codelists = get_phenotype_code_list('PH263', '526', api_client=client)

Version History

Version
ID
Name Owner Publish date
526 Primary Malignancy_Ovarian ieuan.scanlon 2021-10-06 currently shown

Export - export all codes into a csv file/JSON/XML for the current phenotype version.

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