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Primary Malignancy_Pancreatic

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

Type
Disease or Syndrome
ID
PH264
Version ID
528
Valid event data range
01/01/1999 - 01/07/2016
Sex
Female, Male
Agreement Date
2019-05-20
Coding system
Read codes v2 ICD10 codes Med codes
Tags /Collections
CALIBER Phenotype Library

Definition

At the specified date, a patient is defined as having had Primary Malignancy Pancreatic IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Primary care

  1. Primary Malignancy Pancreatic diagnosis or history of diagnosis during a consultation

OR Secondary care

  1. ALL diagnoses of Primary Malignancy Pancreatic or history of diagnosis during a hospitalization

Implementation


Publications

  • Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

Rows: 16
Code Description Disease Medcode Category
B17..00 Malignant neoplasm of pancreas Primary Malignancy_Pancreatic 8166.0 Diagnosis of Primary Malignancy_Pancreatic
B170.00 Malignant neoplasm of head of pancreas Primary Malignancy_Pancreatic 8771.0 Diagnosis of Primary Malignancy_Pancreatic
B171.00 Malignant neoplasm of body of pancreas Primary Malignancy_Pancreatic 40810.0 Diagnosis of Primary Malignancy_Pancreatic
B172.00 Malignant neoplasm of tail of pancreas Primary Malignancy_Pancreatic 39870.0 Diagnosis of Primary Malignancy_Pancreatic
B173.00 Malignant neoplasm of pancreatic duct Primary Malignancy_Pancreatic 35535.0 Diagnosis of Primary Malignancy_Pancreatic
B174.00 Malignant neoplasm of Islets of Langerhans Primary Malignancy_Pancreatic 35795.0 Diagnosis of Primary Malignancy_Pancreatic
B175.00 Malignant neoplasm, overlapping lesion of pancreas Primary Malignancy_Pancreatic 97875.0 Diagnosis of Primary Malignancy_Pancreatic
B17y.00 Malignant neoplasm of other specified sites of pancreas Primary Malignancy_Pancreatic 48537.0 Diagnosis of Primary Malignancy_Pancreatic
B17y000 Malignant neoplasm of ectopic pancreatic tissue Primary Malignancy_Pancreatic 96635.0 Diagnosis of Primary Malignancy_Pancreatic
B17yz00 Malignant neoplasm of specified site of pancreas NOS Primary Malignancy_Pancreatic 95783.0 Diagnosis of Primary Malignancy_Pancreatic
B17z.00 Malignant neoplasm of pancreas NOS Primary Malignancy_Pancreatic 34388.0 Diagnosis of Primary Malignancy_Pancreatic
BB5B100 [M]Islet cell carcinoma Primary Malignancy_Pancreatic 63102.0 Diagnosis of Primary Malignancy_Pancreatic
BB5B300 [M]Insulinoma, malignant Primary Malignancy_Pancreatic 95609.0 Diagnosis of Primary Malignancy_Pancreatic
BB5B500 [M]Glucagonoma, malignant Primary Malignancy_Pancreatic 32294.0 Diagnosis of Primary Malignancy_Pancreatic
BB5B600 [M]Mixed islet cell and exocrine adenocarcinoma Primary Malignancy_Pancreatic 98825.0 Diagnosis of Primary Malignancy_Pancreatic
BB5C100 [M]Gastrinoma, malignant Primary Malignancy_Pancreatic 49629.0 Diagnosis of Primary Malignancy_Pancreatic
Rows: 16
Code Description Disease ReadcodeDescr Readcode
32294.0 Diagnosis of Primary Malignancy_Pancreatic Primary Malignancy_Pancreatic [M]Glucagonoma, malignant BB5B500
34388.0 Diagnosis of Primary Malignancy_Pancreatic Primary Malignancy_Pancreatic Malignant neoplasm of pancreas NOS B17z.00
35535.0 Diagnosis of Primary Malignancy_Pancreatic Primary Malignancy_Pancreatic Malignant neoplasm of pancreatic duct B173.00
35795.0 Diagnosis of Primary Malignancy_Pancreatic Primary Malignancy_Pancreatic Malignant neoplasm of Islets of Langerhans B174.00
39870.0 Diagnosis of Primary Malignancy_Pancreatic Primary Malignancy_Pancreatic Malignant neoplasm of tail of pancreas B172.00
40810.0 Diagnosis of Primary Malignancy_Pancreatic Primary Malignancy_Pancreatic Malignant neoplasm of body of pancreas B171.00
48537.0 Diagnosis of Primary Malignancy_Pancreatic Primary Malignancy_Pancreatic Malignant neoplasm of other specified sites of pancreas B17y.00
49629.0 Diagnosis of Primary Malignancy_Pancreatic Primary Malignancy_Pancreatic [M]Gastrinoma, malignant BB5C100
63102.0 Diagnosis of Primary Malignancy_Pancreatic Primary Malignancy_Pancreatic [M]Islet cell carcinoma BB5B100
8166.0 Diagnosis of Primary Malignancy_Pancreatic Primary Malignancy_Pancreatic Malignant neoplasm of pancreas B17..00
8771.0 Diagnosis of Primary Malignancy_Pancreatic Primary Malignancy_Pancreatic Malignant neoplasm of head of pancreas B170.00
95609.0 Diagnosis of Primary Malignancy_Pancreatic Primary Malignancy_Pancreatic [M]Insulinoma, malignant BB5B300
95783.0 Diagnosis of Primary Malignancy_Pancreatic Primary Malignancy_Pancreatic Malignant neoplasm of specified site of pancreas NOS B17yz00
96635.0 Diagnosis of Primary Malignancy_Pancreatic Primary Malignancy_Pancreatic Malignant neoplasm of ectopic pancreatic tissue B17y000
97875.0 Diagnosis of Primary Malignancy_Pancreatic Primary Malignancy_Pancreatic Malignant neoplasm, overlapping lesion of pancreas B175.00
98825.0 Diagnosis of Primary Malignancy_Pancreatic Primary Malignancy_Pancreatic [M]Mixed islet cell and exocrine adenocarcinoma BB5B600
Rows: 1
Code Description Disease Category
C25 Malignant neoplasm of pancreas Primary Malignancy_Pancreatic Diagnosis of Primary Malignancy_Pancreatic

API

To Export Phenotype Details:

Format API
XML site_root/api/v1/public/phenotypes/PH264/version/528/detail/?format=xml
JSON site_root/api/v1/public/phenotypes/PH264/version/528/detail/?format=json
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get details of phenotype

details = get_phenotype_detail_by_version('PH264', '528', api_client=client)

To Export Phenotype Code List:

Format API
XML site_root/api/v1/public/phenotypes/PH264/version/528/export/codes/?format=xml
JSON site_root/api/v1/public/phenotypes/PH264/version/528/export/codes/?format=json
CSV site_root/phenotypes/PH264/version/528/export/codes/
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get codelists of phenotype

codelists = get_phenotype_code_list('PH264', '528', api_client=client)

Version History

Version
ID
Name Owner Publish date
528 Primary Malignancy_Pancreatic ieuan.scanlon 2021-10-06 currently shown

Export - export all codes into a csv file/JSON/XML for the current phenotype version.

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