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Primary Malignancy_Prostate

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

ID
PH265
Version ID
530
Type
Disease or Syndrome
Valid event data range
01/01/1999 - 01/07/2016
Sex
♀  Female ♂  Male
Agreement Date
2019-05-20
Coding system
Read codes v2 ICD10 codes Med codes
Collections
CALIBER Phenotype Library
Tags
No tags

Definition

At the specified date, a patient is defined as having had 'Primary Malignancy_Prostate' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Primary care

  1. Primary Malignancy_Prostate diagnosis or history of diagnosis during a consultation

OR Secondary care

  1. ALL diagnoses of Primary Malignancy_Prostate or history of diagnosis during a hospitalization

Implementation


Publications

  • Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

Rows: 13
Code Description Disease Medcode Category
1427000.0 H/O: prostate cancer Primary Malignancy_Prostate 102314.0 History of Primary Malignancy_Prostate
4M0..00 Gleason grading of prostate cancer Primary Malignancy_Prostate 10178.0 Diagnosis of Primary Malignancy_Prostate
4M00.00 Gleason prostate grade 2-4 (low) Primary Malignancy_Prostate 18503.0 Diagnosis of Primary Malignancy_Prostate
4M01.00 Gleason prostate grade 5-7 (medium) Primary Malignancy_Prostate 18612.0 Diagnosis of Primary Malignancy_Prostate
4M02.00 Gleason prostate grade 8-10 (high) Primary Malignancy_Prostate 26081.0 Diagnosis of Primary Malignancy_Prostate
7B20000 Radical cystoprostatourethrectomy Primary Malignancy_Prostate 9541.0 Procedure for Primary Malignancy_Prostate
7B20200 Radical cystoprostatectomy Primary Malignancy_Prostate 10633.0 Procedure for Primary Malignancy_Prostate
7B36000 Radical prostatectomy - unspecified excision of pelvic nodes Primary Malignancy_Prostate 4997.0 Procedure for Primary Malignancy_Prostate
7B36500 Radical prostatectomy without pelvic node excision Primary Malignancy_Prostate 12593.0 Procedure for Primary Malignancy_Prostate
7B36600 Radical prostatectomy with pelvic node sampling Primary Malignancy_Prostate 11492.0 Procedure for Primary Malignancy_Prostate
7B36700 Radical prostatectomy with pelvic lymphadenectomy Primary Malignancy_Prostate 9533.0 Procedure for Primary Malignancy_Prostate
B46..00 Malignant neoplasm of prostate Primary Malignancy_Prostate 780.0 Diagnosis of Primary Malignancy_Prostate
ZV10415 [V]Personal history of malignant neoplasm of prostate Primary Malignancy_Prostate 37306.0 History of Primary Malignancy_Prostate
Rows: 13
Code Description Disease ReadcodeDescr Readcode
10178.0 Diagnosis of Primary Malignancy_Prostate Primary Malignancy_Prostate Gleason grading of prostate cancer 4M0..00
102314.0 History of Primary Malignancy_Prostate Primary Malignancy_Prostate H/O: prostate cancer 1427000.0
10633.0 Procedure for Primary Malignancy_Prostate Primary Malignancy_Prostate Radical cystoprostatectomy 7B20200
11492.0 Procedure for Primary Malignancy_Prostate Primary Malignancy_Prostate Radical prostatectomy with pelvic node sampling 7B36600
12593.0 Procedure for Primary Malignancy_Prostate Primary Malignancy_Prostate Radical prostatectomy without pelvic node excision 7B36500
18503.0 Diagnosis of Primary Malignancy_Prostate Primary Malignancy_Prostate Gleason prostate grade 2-4 (low) 4M00.00
18612.0 Diagnosis of Primary Malignancy_Prostate Primary Malignancy_Prostate Gleason prostate grade 5-7 (medium) 4M01.00
26081.0 Diagnosis of Primary Malignancy_Prostate Primary Malignancy_Prostate Gleason prostate grade 8-10 (high) 4M02.00
37306.0 History of Primary Malignancy_Prostate Primary Malignancy_Prostate [V]Personal history of malignant neoplasm of prostate ZV10415
4997.0 Procedure for Primary Malignancy_Prostate Primary Malignancy_Prostate Radical prostatectomy - unspecified excision of pelvic nodes 7B36000
780.0 Diagnosis of Primary Malignancy_Prostate Primary Malignancy_Prostate Malignant neoplasm of prostate B46..00
9533.0 Procedure for Primary Malignancy_Prostate Primary Malignancy_Prostate Radical prostatectomy with pelvic lymphadenectomy 7B36700
9541.0 Procedure for Primary Malignancy_Prostate Primary Malignancy_Prostate Radical cystoprostatourethrectomy 7B20000
Rows: 1
Code Description Disease Category
C61 Malignant neoplasm of prostate Primary Malignancy_Prostate Diagnosis of Primary Malignancy_Prostate

API

To Export Phenotype Details:

Format API
XML site_root/api/v1/public/phenotypes/PH265/version/530/detail/?format=xml
JSON site_root/api/v1/public/phenotypes/PH265/version/530/detail/?format=json
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get details of phenotype

details = get_phenotype_detail_by_version('PH265', '530', api_client=client)

To Export Phenotype Code List:

Format API
XML site_root/api/v1/public/phenotypes/PH265/version/530/export/codes/?format=xml
JSON site_root/api/v1/public/phenotypes/PH265/version/530/export/codes/?format=json
CSV site_root/phenotypes/PH265/version/530/export/codes/
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get codelists of phenotype

codelists = get_phenotype_code_list('PH265', '530', api_client=client)

Version History

Version
ID
Name Owner Publish date
530 Primary Malignancy_Prostate ieuan.scanlon 2021-10-06 currently shown

Export - export all codes into a csv file/JSON/XML for the current phenotype version.

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