Phenotypes > Primary Malignancy_Stomach

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Primary Malignancy_Stomach

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

ID
PH267
Version ID
534
Type
Disease or Syndrome
Data Sources
CPRD GOLD , HES Admitted Patient Care data for CPRD GOLD
Valid event data range
01/01/1999 - 01/07/2016
Sex
♀  Female ♂  Male
Agreement Date
2019-05-20
Coding system
Read codes v2 ICD10 codes Med codes
Collections
CALIBER Phenotype Library
Tags
No tags

Definition

At the specified date, a patient is defined as having had Primary Malignancy Stomach IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Primary care

  1. Primary Malignancy Stomach diagnosis or history of diagnosis during a consultation

OR Secondary care

  1. ALL diagnoses of Primary Malignancy Stomach or history of diagnosis during a hospitalization

Implementation


https://kclhi.org/phenoflow/phenotype/download/778

Publications

  • Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

Expand All  /  Collapse All
Rows: 24
Code Description Disease Medcode Category
B11..00 Malignant neoplasm of stomach Primary Malignancy_Stomach 8386.0 Diagnosis of Primary Malignancy_Stomach
B110.00 Malignant neoplasm of cardia of stomach Primary Malignancy_Stomach 32022.0 Diagnosis of Primary Malignancy_Stomach
B110000 Malignant neoplasm of cardiac orifice of stomach Primary Malignancy_Stomach 100584.0 Diagnosis of Primary Malignancy_Stomach
B110100 Malignant neoplasm of cardio-oesophageal junction of stomach Primary Malignancy_Stomach 22894.0 Diagnosis of Primary Malignancy_Stomach
B110111 Malignant neoplasm of gastro-oesophageal junction Primary Malignancy_Stomach 94278.0 Diagnosis of Primary Malignancy_Stomach
B110z00 Malignant neoplasm of cardia of stomach NOS Primary Malignancy_Stomach 37859.0 Diagnosis of Primary Malignancy_Stomach
B111.00 Malignant neoplasm of pylorus of stomach Primary Malignancy_Stomach 21620.0 Diagnosis of Primary Malignancy_Stomach
B111000 Malignant neoplasm of prepylorus of stomach Primary Malignancy_Stomach 48237.0 Diagnosis of Primary Malignancy_Stomach
B111100 Malignant neoplasm of pyloric canal of stomach Primary Malignancy_Stomach 41215.0 Diagnosis of Primary Malignancy_Stomach
B111z00 Malignant neoplasm of pylorus of stomach NOS Primary Malignancy_Stomach 59092.0 Diagnosis of Primary Malignancy_Stomach
B112.00 Malignant neoplasm of pyloric antrum of stomach Primary Malignancy_Stomach 19318.0 Diagnosis of Primary Malignancy_Stomach
B113.00 Malignant neoplasm of fundus of stomach Primary Malignancy_Stomach 32362.0 Diagnosis of Primary Malignancy_Stomach
B114.00 Malignant neoplasm of body of stomach Primary Malignancy_Stomach 43572.0 Diagnosis of Primary Malignancy_Stomach
B115.00 Malignant neoplasm of lesser curve of stomach unspecified Primary Malignancy_Stomach 42193.0 Diagnosis of Primary Malignancy_Stomach
B116.00 Malignant neoplasm of greater curve of stomach unspecified Primary Malignancy_Stomach 55434.0 Diagnosis of Primary Malignancy_Stomach
B117.00 Malignant neoplasm, overlapping lesion of stomach Primary Malignancy_Stomach 51690.0 Diagnosis of Primary Malignancy_Stomach
B118.00 Siewert type II adenocarcinoma Primary Malignancy_Stomach 97499.0 Diagnosis of Primary Malignancy_Stomach
B119.00 Siewert type III adenocarcinoma Primary Malignancy_Stomach 96094.0 Diagnosis of Primary Malignancy_Stomach
B11y.00 Malignant neoplasm of other specified site of stomach Primary Malignancy_Stomach 55019.0 Diagnosis of Primary Malignancy_Stomach
B11y000 Malignant neoplasm of anterior wall of stomach NEC Primary Malignancy_Stomach 65312.0 Diagnosis of Primary Malignancy_Stomach
B11y100 Malignant neoplasm of posterior wall of stomach NEC Primary Malignancy_Stomach 96802.0 Diagnosis of Primary Malignancy_Stomach
B11yz00 Malignant neoplasm of other specified site of stomach NOS Primary Malignancy_Stomach 65372.0 Diagnosis of Primary Malignancy_Stomach
B11z.00 Malignant neoplasm of stomach NOS Primary Malignancy_Stomach 14800.0 Diagnosis of Primary Malignancy_Stomach
ZV10018 [V]Personal history of malignant neoplasm of stomach Primary Malignancy_Stomach 49447.0 History of Primary Malignancy_Stomach
Rows: 24
Code Description Disease ReadcodeDescr Readcode
100584.0 Diagnosis of Primary Malignancy_Stomach Primary Malignancy_Stomach Malignant neoplasm of cardiac orifice of stomach B110000
14800.0 Diagnosis of Primary Malignancy_Stomach Primary Malignancy_Stomach Malignant neoplasm of stomach NOS B11z.00
19318.0 Diagnosis of Primary Malignancy_Stomach Primary Malignancy_Stomach Malignant neoplasm of pyloric antrum of stomach B112.00
21620.0 Diagnosis of Primary Malignancy_Stomach Primary Malignancy_Stomach Malignant neoplasm of pylorus of stomach B111.00
22894.0 Diagnosis of Primary Malignancy_Stomach Primary Malignancy_Stomach Malignant neoplasm of cardio-oesophageal junction of stomach B110100
32022.0 Diagnosis of Primary Malignancy_Stomach Primary Malignancy_Stomach Malignant neoplasm of cardia of stomach B110.00
32362.0 Diagnosis of Primary Malignancy_Stomach Primary Malignancy_Stomach Malignant neoplasm of fundus of stomach B113.00
37859.0 Diagnosis of Primary Malignancy_Stomach Primary Malignancy_Stomach Malignant neoplasm of cardia of stomach NOS B110z00
41215.0 Diagnosis of Primary Malignancy_Stomach Primary Malignancy_Stomach Malignant neoplasm of pyloric canal of stomach B111100
42193.0 Diagnosis of Primary Malignancy_Stomach Primary Malignancy_Stomach Malignant neoplasm of lesser curve of stomach unspecified B115.00
43572.0 Diagnosis of Primary Malignancy_Stomach Primary Malignancy_Stomach Malignant neoplasm of body of stomach B114.00
48237.0 Diagnosis of Primary Malignancy_Stomach Primary Malignancy_Stomach Malignant neoplasm of prepylorus of stomach B111000
49447.0 History of Primary Malignancy_Stomach Primary Malignancy_Stomach [V]Personal history of malignant neoplasm of stomach ZV10018
51690.0 Diagnosis of Primary Malignancy_Stomach Primary Malignancy_Stomach Malignant neoplasm, overlapping lesion of stomach B117.00
55019.0 Diagnosis of Primary Malignancy_Stomach Primary Malignancy_Stomach Malignant neoplasm of other specified site of stomach B11y.00
55434.0 Diagnosis of Primary Malignancy_Stomach Primary Malignancy_Stomach Malignant neoplasm of greater curve of stomach unspecified B116.00
59092.0 Diagnosis of Primary Malignancy_Stomach Primary Malignancy_Stomach Malignant neoplasm of pylorus of stomach NOS B111z00
65312.0 Diagnosis of Primary Malignancy_Stomach Primary Malignancy_Stomach Malignant neoplasm of anterior wall of stomach NEC B11y000
65372.0 Diagnosis of Primary Malignancy_Stomach Primary Malignancy_Stomach Malignant neoplasm of other specified site of stomach NOS B11yz00
8386.0 Diagnosis of Primary Malignancy_Stomach Primary Malignancy_Stomach Malignant neoplasm of stomach B11..00
94278.0 Diagnosis of Primary Malignancy_Stomach Primary Malignancy_Stomach Malignant neoplasm of gastro-oesophageal junction B110111
96094.0 Diagnosis of Primary Malignancy_Stomach Primary Malignancy_Stomach Siewert type III adenocarcinoma B119.00
96802.0 Diagnosis of Primary Malignancy_Stomach Primary Malignancy_Stomach Malignant neoplasm of posterior wall of stomach NEC B11y100
97499.0 Diagnosis of Primary Malignancy_Stomach Primary Malignancy_Stomach Siewert type II adenocarcinoma B118.00
Rows: 1
Code Description Disease Category
C16 Malignant neoplasm of stomach Primary Malignancy_Stomach Diagnosis of Primary Malignancy_Stomach

API

To Export Phenotype Details:

Format API
XML site_root/api/v1/public/phenotypes/PH267/version/534/detail/?format=xml
JSON site_root/api/v1/public/phenotypes/PH267/version/534/detail/?format=json
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get details of phenotype

details = get_phenotype_detail_by_version('PH267', '534', api_client=client)

To Export Phenotype Code List:

Format API
XML site_root/api/v1/public/phenotypes/PH267/version/534/export/codes/?format=xml
JSON site_root/api/v1/public/phenotypes/PH267/version/534/export/codes/?format=json
CSV site_root/phenotypes/PH267/version/534/export/codes/
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get codelists of phenotype

codelists = get_phenotype_code_list('PH267', '534', api_client=client)

Version History

Version
ID		 Name Owner Publish date
534 Primary Malignancy_Stomach ieuan.scanlon 2021-10-06 currently shown

Export - export all codes into a csv file/JSON/XML for the current phenotype version.

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