Phenotype Library | phenotype: Primary Malignancy

Primary Malignancy_Testicular

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

PH268

Version ID

536

Type

Disease or Syndrome

Data Sources

CPRD GOLD , HES Admitted Patient Care data for CPRD GOLD

Valid event data range

01/01/1999 - 01/07/2016

Sex

♀ Female ♂ Male

Agreement Date

2019-05-20

Coding system

Read codes v2 ICD10 codes Med codes

Collections

CALIBER Phenotype Library

Definition

At the specified date, a patient is defined as having had Primary Malignancy Testicular IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Primary care

Primary Malignancy Testicular diagnosis or history of diagnosis during a consultation

OR Secondary care

ALL diagnoses of Primary Malignancy Testicular or history of diagnosis during a hospitalization

Implementation

PhenoFlow Implementation:

https://kclhi.org/phenoflow/phenotype/download/782

Publications

Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

CSV

JSON

XML

Expand All / Collapse All

C1448/4035 Primary Malignancy_Testicular - Primary care - Read codes v2

Rows: 13

Code	Description	Disease	Medcode	Category
B47..00	Malignant neoplasm of testis	Primary Malignancy_Testicular	15148.0	Diagnosis of Primary Malignancy_Testicular
B470.00	Malignant neoplasm of undescended testis	Primary Malignancy_Testicular	64602.0	Diagnosis of Primary Malignancy_Testicular
B470200	Seminoma of undescended testis	Primary Malignancy_Testicular	7740.0	Diagnosis of Primary Malignancy_Testicular
B470300	Teratoma of undescended testis	Primary Malignancy_Testicular	36325.0	Diagnosis of Primary Malignancy_Testicular
B470z00	Malignant neoplasm of undescended testis NOS	Primary Malignancy_Testicular	96429.0	Diagnosis of Primary Malignancy_Testicular
B471.00	Malignant neoplasm of descended testis	Primary Malignancy_Testicular	19475.0	Diagnosis of Primary Malignancy_Testicular
B471000	Seminoma of descended testis	Primary Malignancy_Testicular	21786.0	Diagnosis of Primary Malignancy_Testicular
B471100	Teratoma of descended testis	Primary Malignancy_Testicular	9476.0	Diagnosis of Primary Malignancy_Testicular
B471z00	Malignant neoplasm of descended testis NOS	Primary Malignancy_Testicular	91509.0	Diagnosis of Primary Malignancy_Testicular
B47z.00	Malignant neoplasm of testis NOS	Primary Malignancy_Testicular	38510.0	Diagnosis of Primary Malignancy_Testicular
B47z.11	Seminoma of testis	Primary Malignancy_Testicular	2961.0	Diagnosis of Primary Malignancy_Testicular
B47z.12	Teratoma of testis	Primary Malignancy_Testicular	15989.0	Diagnosis of Primary Malignancy_Testicular
ZV10416	[V]Personal history of malignant neoplasm of testis	Primary Malignancy_Testicular	48808.0	History of Primary Malignancy_Testicular

C1449/4037 Primary Malignancy_Testicular - Primary care - Med codes

Rows: 13

Code	Description	Disease	ReadcodeDescr	Readcode
15148.0	Diagnosis of Primary Malignancy_Testicular	Primary Malignancy_Testicular	Malignant neoplasm of testis	B47..00
15989.0	Diagnosis of Primary Malignancy_Testicular	Primary Malignancy_Testicular	Teratoma of testis	B47z.12
19475.0	Diagnosis of Primary Malignancy_Testicular	Primary Malignancy_Testicular	Malignant neoplasm of descended testis	B471.00
21786.0	Diagnosis of Primary Malignancy_Testicular	Primary Malignancy_Testicular	Seminoma of descended testis	B471000
2961.0	Diagnosis of Primary Malignancy_Testicular	Primary Malignancy_Testicular	Seminoma of testis	B47z.11
36325.0	Diagnosis of Primary Malignancy_Testicular	Primary Malignancy_Testicular	Teratoma of undescended testis	B470300
38510.0	Diagnosis of Primary Malignancy_Testicular	Primary Malignancy_Testicular	Malignant neoplasm of testis NOS	B47z.00
48808.0	History of Primary Malignancy_Testicular	Primary Malignancy_Testicular	[V]Personal history of malignant neoplasm of testis	ZV10416
64602.0	Diagnosis of Primary Malignancy_Testicular	Primary Malignancy_Testicular	Malignant neoplasm of undescended testis	B470.00
7740.0	Diagnosis of Primary Malignancy_Testicular	Primary Malignancy_Testicular	Seminoma of undescended testis	B470200
91509.0	Diagnosis of Primary Malignancy_Testicular	Primary Malignancy_Testicular	Malignant neoplasm of descended testis NOS	B471z00
9476.0	Diagnosis of Primary Malignancy_Testicular	Primary Malignancy_Testicular	Teratoma of descended testis	B471100
96429.0	Diagnosis of Primary Malignancy_Testicular	Primary Malignancy_Testicular	Malignant neoplasm of undescended testis NOS	B470z00

C1450/4039 Primary Malignancy_Testicular - Secondary care - Diagnoses - ICD10 codes

Rows: 1

Code	Description	Disease	Category
C62	Malignant neoplasm of testis	Primary Malignancy_Testicular	Diagnosis of Primary Malignancy_Testicular

API

To Export Phenotype Details:

Format	API
XML	site_root/api/v1/public/phenotypes/PH268/version/536/detail/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH268/version/536/detail/?format=json
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get details of phenotype details = get_phenotype_detail_by_version('PH268', '536', api_client=client)`

To Export Phenotype Code List:

Format	API
XML	site_root/api/v1/public/phenotypes/PH268/version/536/export/codes/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH268/version/536/export/codes/?format=json
CSV	site_root/phenotypes/PH268/version/536/export/codes/
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get codelists of phenotype codelists = get_phenotype_code_list('PH268', '536', api_client=client)`

Version History

Version ID	Name	Owner	Publish date
536	Primary Malignancy_Testicular	ieuan.scanlon	2021-10-06	currently shown