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Primary Malignancy_Testicular

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

Type
Disease or Syndrome
ID
PH268
Version ID
536
Valid event data range
01/01/1999 - 01/07/2016
Sex
Female, Male
Agreement Date
2019-05-20
Coding system
Read codes v2 ICD10 codes Med codes
Tags /Collections
CALIBER Phenotype Library

Definition

At the specified date, a patient is defined as having had Primary Malignancy Testicular IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Primary care

  1. Primary Malignancy Testicular diagnosis or history of diagnosis during a consultation

OR Secondary care

  1. ALL diagnoses of Primary Malignancy Testicular or history of diagnosis during a hospitalization

Implementation


Publications

  • Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

Rows: 13
Code Description Disease Medcode Category
B47..00 Malignant neoplasm of testis Primary Malignancy_Testicular 15148.0 Diagnosis of Primary Malignancy_Testicular
B470.00 Malignant neoplasm of undescended testis Primary Malignancy_Testicular 64602.0 Diagnosis of Primary Malignancy_Testicular
B470200 Seminoma of undescended testis Primary Malignancy_Testicular 7740.0 Diagnosis of Primary Malignancy_Testicular
B470300 Teratoma of undescended testis Primary Malignancy_Testicular 36325.0 Diagnosis of Primary Malignancy_Testicular
B470z00 Malignant neoplasm of undescended testis NOS Primary Malignancy_Testicular 96429.0 Diagnosis of Primary Malignancy_Testicular
B471.00 Malignant neoplasm of descended testis Primary Malignancy_Testicular 19475.0 Diagnosis of Primary Malignancy_Testicular
B471000 Seminoma of descended testis Primary Malignancy_Testicular 21786.0 Diagnosis of Primary Malignancy_Testicular
B471100 Teratoma of descended testis Primary Malignancy_Testicular 9476.0 Diagnosis of Primary Malignancy_Testicular
B471z00 Malignant neoplasm of descended testis NOS Primary Malignancy_Testicular 91509.0 Diagnosis of Primary Malignancy_Testicular
B47z.00 Malignant neoplasm of testis NOS Primary Malignancy_Testicular 38510.0 Diagnosis of Primary Malignancy_Testicular
B47z.11 Seminoma of testis Primary Malignancy_Testicular 2961.0 Diagnosis of Primary Malignancy_Testicular
B47z.12 Teratoma of testis Primary Malignancy_Testicular 15989.0 Diagnosis of Primary Malignancy_Testicular
ZV10416 [V]Personal history of malignant neoplasm of testis Primary Malignancy_Testicular 48808.0 History of Primary Malignancy_Testicular
Rows: 13
Code Description Disease ReadcodeDescr Readcode
15148.0 Diagnosis of Primary Malignancy_Testicular Primary Malignancy_Testicular Malignant neoplasm of testis B47..00
15989.0 Diagnosis of Primary Malignancy_Testicular Primary Malignancy_Testicular Teratoma of testis B47z.12
19475.0 Diagnosis of Primary Malignancy_Testicular Primary Malignancy_Testicular Malignant neoplasm of descended testis B471.00
21786.0 Diagnosis of Primary Malignancy_Testicular Primary Malignancy_Testicular Seminoma of descended testis B471000
2961.0 Diagnosis of Primary Malignancy_Testicular Primary Malignancy_Testicular Seminoma of testis B47z.11
36325.0 Diagnosis of Primary Malignancy_Testicular Primary Malignancy_Testicular Teratoma of undescended testis B470300
38510.0 Diagnosis of Primary Malignancy_Testicular Primary Malignancy_Testicular Malignant neoplasm of testis NOS B47z.00
48808.0 History of Primary Malignancy_Testicular Primary Malignancy_Testicular [V]Personal history of malignant neoplasm of testis ZV10416
64602.0 Diagnosis of Primary Malignancy_Testicular Primary Malignancy_Testicular Malignant neoplasm of undescended testis B470.00
7740.0 Diagnosis of Primary Malignancy_Testicular Primary Malignancy_Testicular Seminoma of undescended testis B470200
91509.0 Diagnosis of Primary Malignancy_Testicular Primary Malignancy_Testicular Malignant neoplasm of descended testis NOS B471z00
9476.0 Diagnosis of Primary Malignancy_Testicular Primary Malignancy_Testicular Teratoma of descended testis B471100
96429.0 Diagnosis of Primary Malignancy_Testicular Primary Malignancy_Testicular Malignant neoplasm of undescended testis NOS B470z00
Rows: 1
Code Description Disease Category
C62 Malignant neoplasm of testis Primary Malignancy_Testicular Diagnosis of Primary Malignancy_Testicular

API

To Export Phenotype Details:

Format API
XML site_root/api/v1/public/phenotypes/PH268/version/536/detail/?format=xml
JSON site_root/api/v1/public/phenotypes/PH268/version/536/detail/?format=json
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get details of phenotype

details = get_phenotype_detail_by_version('PH268', '536', api_client=client)

To Export Phenotype Code List:

Format API
XML site_root/api/v1/public/phenotypes/PH268/version/536/export/codes/?format=xml
JSON site_root/api/v1/public/phenotypes/PH268/version/536/export/codes/?format=json
CSV site_root/phenotypes/PH268/version/536/export/codes/
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get codelists of phenotype

codelists = get_phenotype_code_list('PH268', '536', api_client=client)

Version History

Version
ID
Name Owner Publish date
536 Primary Malignancy_Testicular ieuan.scanlon 2021-10-06 currently shown

Export - export all codes into a csv file/JSON/XML for the current phenotype version.

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