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Primary Malignancy_Thyroid

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

Type
Disease or Syndrome
ID
PH270
Version ID
540
Valid event data range
01/01/1999 - 01/07/2016
Sex
Female, Male
Agreement Date
2019-05-20
Coding system
Read codes v2 ICD10 codes Med codes
Tags /Collections
CALIBER Phenotype Library

Definition

At the specified date, a patient is defined as having had Primary Malignancy Thyroid IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Primary care

  1. Primary Malignancy Thyroid diagnosis or history of diagnosis during a consultation

OR Secondary care

  1. ALL diagnoses of Primary Malignancy Thyroid or history of diagnosis during a hospitalization

Implementation


Publications

  • Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

Rows: 2
Code Description Disease Medcode Category
B53..00 Malignant neoplasm of thyroid gland Primary Malignancy_Thyroid 5637.0 Diagnosis of Primary Malignancy_Thyroid
ZV10y15 [V]Personal history of malignant neoplasm of thyroid Primary Malignancy_Thyroid 35771.0 History of Primary Malignancy_Thyroid
Rows: 2
Code Description Disease ReadcodeDescr Readcode
35771.0 History of Primary Malignancy_Thyroid Primary Malignancy_Thyroid [V]Personal history of malignant neoplasm of thyroid ZV10y15
5637.0 Diagnosis of Primary Malignancy_Thyroid Primary Malignancy_Thyroid Malignant neoplasm of thyroid gland B53..00
Rows: 1
Code Description Disease Category
C73 Malignant neoplasm of thyroid gland Primary Malignancy_Thyroid Diagnosis of Primary Malignancy_Thyroid

API

To Export Phenotype Details:

Format API
XML site_root/api/v1/public/phenotypes/PH270/version/540/detail/?format=xml
JSON site_root/api/v1/public/phenotypes/PH270/version/540/detail/?format=json
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get details of phenotype

details = get_phenotype_detail_by_version('PH270', '540', api_client=client)

To Export Phenotype Code List:

Format API
XML site_root/api/v1/public/phenotypes/PH270/version/540/export/codes/?format=xml
JSON site_root/api/v1/public/phenotypes/PH270/version/540/export/codes/?format=json
CSV site_root/phenotypes/PH270/version/540/export/codes/
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get codelists of phenotype

codelists = get_phenotype_code_list('PH270', '540', api_client=client)

Version History

Version
ID
Name Owner Publish date
540 Primary Malignancy_Thyroid ieuan.scanlon 2021-10-06 currently shown

Export - export all codes into a csv file/JSON/XML for the current phenotype version.

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