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Primary Malignancy_Uterine

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

Type
Disease or Syndrome
ID
PH271
Version ID
542
Valid event data range
01/01/1999 - 01/07/2016
Sex
Female, Male
Agreement Date
2019-05-20
Coding system
Read codes v2 ICD10 codes Med codes
Tags /Collections
CALIBER Phenotype Library

Definition

At the specified date, a patient is defined as having had Primary Malignancy Uterine IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Primary care

  1. Primary Malignancy Uterine diagnosis or history of diagnosis during a consultation

OR Secondary care

  1. ALL diagnoses of Primary Malignancy Uterine or history of diagnosis during a hospitalization

Implementation


Publications

  • Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

Rows: 16
Code Description Disease Medcode Category
B40..00 Malignant neoplasm of uterus, part unspecified Primary Malignancy_Uterine 2744.0 Diagnosis of Primary Malignancy_Uterine
B43..00 Malignant neoplasm of body of uterus Primary Malignancy_Uterine 7046.0 Diagnosis of Primary Malignancy_Uterine
B430.00 Malignant neoplasm of corpus uteri, excluding isthmus Primary Malignancy_Uterine 3213.0 Diagnosis of Primary Malignancy_Uterine
B430000 Malignant neoplasm of cornu of corpus uteri Primary Malignancy_Uterine 72723.0 Diagnosis of Primary Malignancy_Uterine
B430100 Malignant neoplasm of fundus of corpus uteri Primary Malignancy_Uterine 68155.0 Diagnosis of Primary Malignancy_Uterine
B430200 Malignant neoplasm of endometrium of corpus uteri Primary Malignancy_Uterine 2890.0 Diagnosis of Primary Malignancy_Uterine
B430211 Malignant neoplasm of endometrium Primary Malignancy_Uterine 49400.0 Diagnosis of Primary Malignancy_Uterine
B430300 Malignant neoplasm of myometrium of corpus uteri Primary Malignancy_Uterine 45793.0 Diagnosis of Primary Malignancy_Uterine
B430z00 Malignant neoplasm of corpus uteri NOS Primary Malignancy_Uterine 45490.0 Diagnosis of Primary Malignancy_Uterine
B431.00 Malignant neoplasm of isthmus of uterine body Primary Malignancy_Uterine 43940.0 Diagnosis of Primary Malignancy_Uterine
B431000 Malignant neoplasm of lower uterine segment Primary Malignancy_Uterine 59097.0 Diagnosis of Primary Malignancy_Uterine
B431z00 Malignant neoplasm of isthmus of uterine body NOS Primary Malignancy_Uterine 70729.0 Diagnosis of Primary Malignancy_Uterine
B432.00 Malignant neoplasm of overlapping lesion of corpus uteri Primary Malignancy_Uterine 16967.0 Diagnosis of Primary Malignancy_Uterine
B43y.00 Malignant neoplasm of other site of uterine body Primary Malignancy_Uterine 31608.0 Diagnosis of Primary Malignancy_Uterine
B43z.00 Malignant neoplasm of body of uterus NOS Primary Malignancy_Uterine 33617.0 Diagnosis of Primary Malignancy_Uterine
ZV10417 [V]Personal history of malignant neoplasm of uterine body Primary Malignancy_Uterine 46779.0 History of Primary Malignancy_Uterine
Rows: 16
Code Description Disease ReadcodeDescr Readcode
16967.0 Diagnosis of Primary Malignancy_Uterine Primary Malignancy_Uterine Malignant neoplasm of overlapping lesion of corpus uteri B432.00
2744.0 Diagnosis of Primary Malignancy_Uterine Primary Malignancy_Uterine Malignant neoplasm of uterus, part unspecified B40..00
2890.0 Diagnosis of Primary Malignancy_Uterine Primary Malignancy_Uterine Malignant neoplasm of endometrium of corpus uteri B430200
31608.0 Diagnosis of Primary Malignancy_Uterine Primary Malignancy_Uterine Malignant neoplasm of other site of uterine body B43y.00
3213.0 Diagnosis of Primary Malignancy_Uterine Primary Malignancy_Uterine Malignant neoplasm of corpus uteri, excluding isthmus B430.00
33617.0 Diagnosis of Primary Malignancy_Uterine Primary Malignancy_Uterine Malignant neoplasm of body of uterus NOS B43z.00
43940.0 Diagnosis of Primary Malignancy_Uterine Primary Malignancy_Uterine Malignant neoplasm of isthmus of uterine body B431.00
45490.0 Diagnosis of Primary Malignancy_Uterine Primary Malignancy_Uterine Malignant neoplasm of corpus uteri NOS B430z00
45793.0 Diagnosis of Primary Malignancy_Uterine Primary Malignancy_Uterine Malignant neoplasm of myometrium of corpus uteri B430300
46779.0 History of Primary Malignancy_Uterine Primary Malignancy_Uterine [V]Personal history of malignant neoplasm of uterine body ZV10417
49400.0 Diagnosis of Primary Malignancy_Uterine Primary Malignancy_Uterine Malignant neoplasm of endometrium B430211
59097.0 Diagnosis of Primary Malignancy_Uterine Primary Malignancy_Uterine Malignant neoplasm of lower uterine segment B431000
68155.0 Diagnosis of Primary Malignancy_Uterine Primary Malignancy_Uterine Malignant neoplasm of fundus of corpus uteri B430100
7046.0 Diagnosis of Primary Malignancy_Uterine Primary Malignancy_Uterine Malignant neoplasm of body of uterus B43..00
70729.0 Diagnosis of Primary Malignancy_Uterine Primary Malignancy_Uterine Malignant neoplasm of isthmus of uterine body NOS B431z00
72723.0 Diagnosis of Primary Malignancy_Uterine Primary Malignancy_Uterine Malignant neoplasm of cornu of corpus uteri B430000
Rows: 2
Code Description Disease Category
C54 Malignant neoplasm of corpus uteri Primary Malignancy_Uterine Diagnosis of Primary Malignancy_Uterine
C55 Malignant neoplasm of uterus, part unspecified Primary Malignancy_Uterine Diagnosis of Primary Malignancy_Uterine

API

To Export Phenotype Details:

Format API
XML site_root/api/v1/public/phenotypes/PH271/version/542/detail/?format=xml
JSON site_root/api/v1/public/phenotypes/PH271/version/542/detail/?format=json
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get details of phenotype

details = get_phenotype_detail_by_version('PH271', '542', api_client=client)

To Export Phenotype Code List:

Format API
XML site_root/api/v1/public/phenotypes/PH271/version/542/export/codes/?format=xml
JSON site_root/api/v1/public/phenotypes/PH271/version/542/export/codes/?format=json
CSV site_root/phenotypes/PH271/version/542/export/codes/
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get codelists of phenotype

codelists = get_phenotype_code_list('PH271', '542', api_client=client)

Version History

Version
ID
Name Owner Publish date
542 Primary Malignancy_Uterine ieuan.scanlon 2021-10-06 currently shown

Export - export all codes into a csv file/JSON/XML for the current phenotype version.

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