Phenotype Library | phenotype: Primary Malignancy

Primary Malignancy_Uterine

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

PH271

Version ID

542

Type

Disease or Syndrome

Data Sources

CPRD GOLD , HES Admitted Patient Care data for CPRD GOLD

Valid event data range

01/01/1999 - 01/07/2016

Sex

♀ Female ♂ Male

Agreement Date

2019-05-20

Coding system

Read codes v2 ICD10 codes Med codes

Collections

CALIBER Phenotype Library

Definition

At the specified date, a patient is defined as having had Primary Malignancy Uterine IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Primary care

Primary Malignancy Uterine diagnosis or history of diagnosis during a consultation

OR Secondary care

ALL diagnoses of Primary Malignancy Uterine or history of diagnosis during a hospitalization

Implementation

PhenoFlow Implementation:

https://kclhi.org/phenoflow/phenotype/download/790

Publications

Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

CSV

JSON

XML

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C1457/4053 Primary Malignancy_Uterine - Primary care - Read codes v2

Rows: 16

Code	Description	Disease	Medcode	Category
B40..00	Malignant neoplasm of uterus, part unspecified	Primary Malignancy_Uterine	2744.0	Diagnosis of Primary Malignancy_Uterine
B43..00	Malignant neoplasm of body of uterus	Primary Malignancy_Uterine	7046.0	Diagnosis of Primary Malignancy_Uterine
B430.00	Malignant neoplasm of corpus uteri, excluding isthmus	Primary Malignancy_Uterine	3213.0	Diagnosis of Primary Malignancy_Uterine
B430000	Malignant neoplasm of cornu of corpus uteri	Primary Malignancy_Uterine	72723.0	Diagnosis of Primary Malignancy_Uterine
B430100	Malignant neoplasm of fundus of corpus uteri	Primary Malignancy_Uterine	68155.0	Diagnosis of Primary Malignancy_Uterine
B430200	Malignant neoplasm of endometrium of corpus uteri	Primary Malignancy_Uterine	2890.0	Diagnosis of Primary Malignancy_Uterine
B430211	Malignant neoplasm of endometrium	Primary Malignancy_Uterine	49400.0	Diagnosis of Primary Malignancy_Uterine
B430300	Malignant neoplasm of myometrium of corpus uteri	Primary Malignancy_Uterine	45793.0	Diagnosis of Primary Malignancy_Uterine
B430z00	Malignant neoplasm of corpus uteri NOS	Primary Malignancy_Uterine	45490.0	Diagnosis of Primary Malignancy_Uterine
B431.00	Malignant neoplasm of isthmus of uterine body	Primary Malignancy_Uterine	43940.0	Diagnosis of Primary Malignancy_Uterine
B431000	Malignant neoplasm of lower uterine segment	Primary Malignancy_Uterine	59097.0	Diagnosis of Primary Malignancy_Uterine
B431z00	Malignant neoplasm of isthmus of uterine body NOS	Primary Malignancy_Uterine	70729.0	Diagnosis of Primary Malignancy_Uterine
B432.00	Malignant neoplasm of overlapping lesion of corpus uteri	Primary Malignancy_Uterine	16967.0	Diagnosis of Primary Malignancy_Uterine
B43y.00	Malignant neoplasm of other site of uterine body	Primary Malignancy_Uterine	31608.0	Diagnosis of Primary Malignancy_Uterine
B43z.00	Malignant neoplasm of body of uterus NOS	Primary Malignancy_Uterine	33617.0	Diagnosis of Primary Malignancy_Uterine
ZV10417	[V]Personal history of malignant neoplasm of uterine body	Primary Malignancy_Uterine	46779.0	History of Primary Malignancy_Uterine

C1458/4055 Primary Malignancy_Uterine - Primary care - Med codes

Rows: 16

Code	Description	Disease	ReadcodeDescr	Readcode
16967.0	Diagnosis of Primary Malignancy_Uterine	Primary Malignancy_Uterine	Malignant neoplasm of overlapping lesion of corpus uteri	B432.00
2744.0	Diagnosis of Primary Malignancy_Uterine	Primary Malignancy_Uterine	Malignant neoplasm of uterus, part unspecified	B40..00
2890.0	Diagnosis of Primary Malignancy_Uterine	Primary Malignancy_Uterine	Malignant neoplasm of endometrium of corpus uteri	B430200
31608.0	Diagnosis of Primary Malignancy_Uterine	Primary Malignancy_Uterine	Malignant neoplasm of other site of uterine body	B43y.00
3213.0	Diagnosis of Primary Malignancy_Uterine	Primary Malignancy_Uterine	Malignant neoplasm of corpus uteri, excluding isthmus	B430.00
33617.0	Diagnosis of Primary Malignancy_Uterine	Primary Malignancy_Uterine	Malignant neoplasm of body of uterus NOS	B43z.00
43940.0	Diagnosis of Primary Malignancy_Uterine	Primary Malignancy_Uterine	Malignant neoplasm of isthmus of uterine body	B431.00
45490.0	Diagnosis of Primary Malignancy_Uterine	Primary Malignancy_Uterine	Malignant neoplasm of corpus uteri NOS	B430z00
45793.0	Diagnosis of Primary Malignancy_Uterine	Primary Malignancy_Uterine	Malignant neoplasm of myometrium of corpus uteri	B430300
46779.0	History of Primary Malignancy_Uterine	Primary Malignancy_Uterine	[V]Personal history of malignant neoplasm of uterine body	ZV10417
49400.0	Diagnosis of Primary Malignancy_Uterine	Primary Malignancy_Uterine	Malignant neoplasm of endometrium	B430211
59097.0	Diagnosis of Primary Malignancy_Uterine	Primary Malignancy_Uterine	Malignant neoplasm of lower uterine segment	B431000
68155.0	Diagnosis of Primary Malignancy_Uterine	Primary Malignancy_Uterine	Malignant neoplasm of fundus of corpus uteri	B430100
7046.0	Diagnosis of Primary Malignancy_Uterine	Primary Malignancy_Uterine	Malignant neoplasm of body of uterus	B43..00
70729.0	Diagnosis of Primary Malignancy_Uterine	Primary Malignancy_Uterine	Malignant neoplasm of isthmus of uterine body NOS	B431z00
72723.0	Diagnosis of Primary Malignancy_Uterine	Primary Malignancy_Uterine	Malignant neoplasm of cornu of corpus uteri	B430000

C1459/4057 Primary Malignancy_Uterine - Secondary care - Diagnoses - ICD10 codes

Rows: 2

Code	Description	Disease	Category
C54	Malignant neoplasm of corpus uteri	Primary Malignancy_Uterine	Diagnosis of Primary Malignancy_Uterine
C55	Malignant neoplasm of uterus, part unspecified	Primary Malignancy_Uterine	Diagnosis of Primary Malignancy_Uterine

API

To Export Phenotype Details:

Format	API
XML	site_root/api/v1/public/phenotypes/PH271/version/542/detail/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH271/version/542/detail/?format=json
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get details of phenotype details = get_phenotype_detail_by_version('PH271', '542', api_client=client)`

To Export Phenotype Code List:

Format	API
XML	site_root/api/v1/public/phenotypes/PH271/version/542/export/codes/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH271/version/542/export/codes/?format=json
CSV	site_root/phenotypes/PH271/version/542/export/codes/
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get codelists of phenotype codelists = get_phenotype_code_list('PH271', '542', api_client=client)`

Version History

Version ID	Name	Owner	Publish date
542	Primary Malignancy_Uterine	ieuan.scanlon	2021-10-06	currently shown