Print

Pulmonary collapse (excl pneumothorax)

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

Type
Disease or Syndrome
ID
PH275
Version ID
550
Valid event data range
01/01/1999 - 01/07/2016
Sex
Female, Male
Agreement Date
2019-05-20
Coding system
Read codes v2 ICD10 codes Med codes
Tags /Collections
CALIBER Phenotype Library

Definition

At the specified date, a patient is defined as having had 'Pulmonary collapse (excl pneumothorax)' (excl pneumothorax) IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Primary care

  1. 'Pulmonary collapse (excl pneumothorax)' (excl pneumothorax) diagnosis or history of diagnosis during a consultation

OR Secondary care (ICD10)

  1. ALL diagnoses of 'Pulmonary collapse (excl pneumothorax)' (excl pneumothorax) or history of diagnosis during a hospitalization

Publications

  • Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

Rows: 4
Code Description Disease Medcode Category
23E4.11 O/E - collapse - lung Pulmonary collapse (excl pneumothorax) 9855.0 Diagnosis of Pulmonary collapse (excl pneumothorax)
H580.00 Pulmonary collapse with atelectasis Pulmonary collapse (excl pneumothorax) 3094.0 Diagnosis of Pulmonary collapse (excl pneumothorax)
H580.11 Atelectasis Pulmonary collapse (excl pneumothorax) 7324.0 Diagnosis of Pulmonary collapse (excl pneumothorax)
H580.12 Collapse of lung Pulmonary collapse (excl pneumothorax) 8370.0 Diagnosis of Pulmonary collapse (excl pneumothorax)
Rows: 4
Code Description Disease ReadcodeDescr Readcode
3094.0 Diagnosis of Pulmonary collapse (excl pneumothorax) Pulmonary collapse (excl pneumothorax) Pulmonary collapse with atelectasis H580.00
7324.0 Diagnosis of Pulmonary collapse (excl pneumothorax) Pulmonary collapse (excl pneumothorax) Atelectasis H580.11
8370.0 Diagnosis of Pulmonary collapse (excl pneumothorax) Pulmonary collapse (excl pneumothorax) Collapse of lung H580.12
9855.0 Diagnosis of Pulmonary collapse (excl pneumothorax) Pulmonary collapse (excl pneumothorax) O/E - collapse - lung 23E4.11
Rows: 1
Code Description Disease Category
J98.1 Pulmonary collapse Pulmonary collapse (excl pneumothorax) Diagnosis of Pulmonary collapse (excl pneumothorax)

API

To Export Phenotype Details:

Format API
XML site_root/api/v1/public/phenotypes/PH275/version/550/detail/?format=xml
JSON site_root/api/v1/public/phenotypes/PH275/version/550/detail/?format=json
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get details of phenotype

details = get_phenotype_detail_by_version('PH275', '550', api_client=client)

To Export Phenotype Code List:

Format API
XML site_root/api/v1/public/phenotypes/PH275/version/550/export/codes/?format=xml
JSON site_root/api/v1/public/phenotypes/PH275/version/550/export/codes/?format=json
CSV site_root/phenotypes/PH275/version/550/export/codes/
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get codelists of phenotype

codelists = get_phenotype_code_list('PH275', '550', api_client=client)

Version History

Version
ID
Name Owner Publish date
550 Pulmonary collapse (excl pneumothorax) ieuan.scanlon 2021-10-06 currently shown

Export - export all codes into a csv file/JSON/XML for the current phenotype version.

Print - Print page.