Phenotype Library | phenotype: Pulmonary collapse (excl pneumothorax)

Pulmonary collapse (excl pneumothorax)

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

PH275

Version ID

550

Type

Disease or Syndrome

Data Sources

CPRD GOLD , HES Admitted Patient Care data for CPRD GOLD

Valid event data range

01/01/1999 - 01/07/2016

Sex

♀ Female ♂ Male

Agreement Date

2019-05-20

Coding system

Read codes v2 ICD10 codes Med codes

Collections

CALIBER Phenotype Library

Definition

At the specified date, a patient is defined as having had 'Pulmonary collapse (excl pneumothorax)' (excl pneumothorax) IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Primary care

'Pulmonary collapse (excl pneumothorax)' (excl pneumothorax) diagnosis or history of diagnosis during a consultation

OR Secondary care (ICD10)

ALL diagnoses of 'Pulmonary collapse (excl pneumothorax)' (excl pneumothorax) or history of diagnosis during a hospitalization

Publications

Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

CSV

JSON

XML

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C1470/4079 Pulmonary collapse (excl pneumothorax) - Primary care - Read codes v2

Rows: 4

Code	Description	Disease	Medcode	Category
23E4.11	O/E - collapse - lung	Pulmonary collapse (excl pneumothorax)	9855.0	Diagnosis of Pulmonary collapse (excl pneumothorax)
H580.00	Pulmonary collapse with atelectasis	Pulmonary collapse (excl pneumothorax)	3094.0	Diagnosis of Pulmonary collapse (excl pneumothorax)
H580.11	Atelectasis	Pulmonary collapse (excl pneumothorax)	7324.0	Diagnosis of Pulmonary collapse (excl pneumothorax)
H580.12	Collapse of lung	Pulmonary collapse (excl pneumothorax)	8370.0	Diagnosis of Pulmonary collapse (excl pneumothorax)

C1471/4081 Pulmonary collapse (excl pneumothorax) - Primary care - Med codes

Rows: 4

Code	Description	Disease	ReadcodeDescr	Readcode
3094.0	Diagnosis of Pulmonary collapse (excl pneumothorax)	Pulmonary collapse (excl pneumothorax)	Pulmonary collapse with atelectasis	H580.00
7324.0	Diagnosis of Pulmonary collapse (excl pneumothorax)	Pulmonary collapse (excl pneumothorax)	Atelectasis	H580.11
8370.0	Diagnosis of Pulmonary collapse (excl pneumothorax)	Pulmonary collapse (excl pneumothorax)	Collapse of lung	H580.12
9855.0	Diagnosis of Pulmonary collapse (excl pneumothorax)	Pulmonary collapse (excl pneumothorax)	O/E - collapse - lung	23E4.11

C1472/4083 Pulmonary collapse (excl pneumothorax) - Secondary care - Diagnoses - ICD10 codes

Rows: 1

Code	Description	Disease	Category
J98.1	Pulmonary collapse	Pulmonary collapse (excl pneumothorax)	Diagnosis of Pulmonary collapse (excl pneumothorax)

API

To Export Phenotype Details:

Format	API
XML	site_root/api/v1/public/phenotypes/PH275/version/550/detail/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH275/version/550/detail/?format=json
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get details of phenotype details = get_phenotype_detail_by_version('PH275', '550', api_client=client)`

To Export Phenotype Code List:

Format	API
XML	site_root/api/v1/public/phenotypes/PH275/version/550/export/codes/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH275/version/550/export/codes/?format=json
CSV	site_root/phenotypes/PH275/version/550/export/codes/
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get codelists of phenotype codelists = get_phenotype_code_list('PH275', '550', api_client=client)`

Version History

Version ID	Name	Owner	Publish date
550	Pulmonary collapse (excl pneumothorax)	ieuan.scanlon	2021-10-06	currently shown