Phenotype Library | phenotype: Other interstitial pulmonary diseases with fibrosis

Other interstitial pulmonary diseases with fibrosis

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

PH276

Version ID

552

Type

Disease or Syndrome

Data Sources

CPRD GOLD , HES Admitted Patient Care data for CPRD GOLD

Valid event data range

01/01/1999 - 01/07/2016

Sex

♀ Female ♂ Male

Agreement Date

2019-05-20

Coding system

Read codes v2 ICD10 codes Med codes

Collections

CALIBER Phenotype Library

Definition

At the specified date, a patient is defined as having had Other interstitial pulmonary diseases with fibrosis IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Primary care

Other interstitial pulmonary diseases with fibrosis diagnosis or history of diagnosis during a consultation

OR Secondary care (ICD10)

ALL diagnoses of Other interstitial pulmonary diseases with fibrosis or history of diagnosis during a hospitalization

Implementation

PhenoFlow Implementation:

https://kclhi.org/phenoflow/phenotype/download/802

Publications

Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

CSV

JSON

XML

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C1473/4085 Other interstitial pulmonary diseases with fibrosis - Primary care - Read codes v2

Rows: 13

Code	Description	Disease	Medcode	Category
23E5.00	O/E - fibrosis of lung present	Other interstitial pulmonary diseases with fibrosis	2680.0	Diagnosis of Other interstitial pulmonary diseases with fibrosis
23E5.11	O/E - fibrosis of lung	Other interstitial pulmonary diseases with fibrosis	7994.0	Diagnosis of Other interstitial pulmonary diseases with fibrosis
H55..00	Postinflammatory pulmonary fibrosis	Other interstitial pulmonary diseases with fibrosis	7791.0	Diagnosis of Other interstitial pulmonary diseases with fibrosis
H55..11	Cirrhosis of lung	Other interstitial pulmonary diseases with fibrosis	40953.0	Diagnosis of Other interstitial pulmonary diseases with fibrosis
H563.00	Idiopathic fibrosing alveolitis	Other interstitial pulmonary diseases with fibrosis	6837.0	Diagnosis of Other interstitial pulmonary diseases with fibrosis
H563.11	Hamman - Rich syndrome	Other interstitial pulmonary diseases with fibrosis	63174.0	Diagnosis of Other interstitial pulmonary diseases with fibrosis
H563.12	Cryptogenic fibrosing alveolitis	Other interstitial pulmonary diseases with fibrosis	5519.0	Diagnosis of Other interstitial pulmonary diseases with fibrosis
H563.13	Idiopathic pulmonary fibrosis	Other interstitial pulmonary diseases with fibrosis	103753.0	Diagnosis of Other interstitial pulmonary diseases with fibrosis
H563100	Diffuse pulmonary fibrosis	Other interstitial pulmonary diseases with fibrosis	6051.0	Diagnosis of Other interstitial pulmonary diseases with fibrosis
H563200	Pulmonary fibrosis	Other interstitial pulmonary diseases with fibrosis	103472.0	Diagnosis of Other interstitial pulmonary diseases with fibrosis
H563300	Usual interstitial pneumonitis	Other interstitial pulmonary diseases with fibrosis	103559.0	Diagnosis of Other interstitial pulmonary diseases with fibrosis
H563z00	Idiopathic fibrosing alveolitis NOS	Other interstitial pulmonary diseases with fibrosis	28229.0	Diagnosis of Other interstitial pulmonary diseases with fibrosis
Hyu5000	[X]Other interstitial pulmonary diseases with fibrosis	Other interstitial pulmonary diseases with fibrosis	65060.0	Diagnosis of Other interstitial pulmonary diseases with fibrosis

C1474/4087 Other interstitial pulmonary diseases with fibrosis - Primary care - Med codes

Rows: 13

Code	Description	Disease	ReadcodeDescr	Readcode
103472.0	Diagnosis of Other interstitial pulmonary diseases with fibrosis	Other interstitial pulmonary diseases with fibrosis	Pulmonary fibrosis	H563200
103559.0	Diagnosis of Other interstitial pulmonary diseases with fibrosis	Other interstitial pulmonary diseases with fibrosis	Usual interstitial pneumonitis	H563300
103753.0	Diagnosis of Other interstitial pulmonary diseases with fibrosis	Other interstitial pulmonary diseases with fibrosis	Idiopathic pulmonary fibrosis	H563.13
2680.0	Diagnosis of Other interstitial pulmonary diseases with fibrosis	Other interstitial pulmonary diseases with fibrosis	O/E - fibrosis of lung present	23E5.00
28229.0	Diagnosis of Other interstitial pulmonary diseases with fibrosis	Other interstitial pulmonary diseases with fibrosis	Idiopathic fibrosing alveolitis NOS	H563z00
40953.0	Diagnosis of Other interstitial pulmonary diseases with fibrosis	Other interstitial pulmonary diseases with fibrosis	Cirrhosis of lung	H55..11
5519.0	Diagnosis of Other interstitial pulmonary diseases with fibrosis	Other interstitial pulmonary diseases with fibrosis	Cryptogenic fibrosing alveolitis	H563.12
6051.0	Diagnosis of Other interstitial pulmonary diseases with fibrosis	Other interstitial pulmonary diseases with fibrosis	Diffuse pulmonary fibrosis	H563100
63174.0	Diagnosis of Other interstitial pulmonary diseases with fibrosis	Other interstitial pulmonary diseases with fibrosis	Hamman - Rich syndrome	H563.11
65060.0	Diagnosis of Other interstitial pulmonary diseases with fibrosis	Other interstitial pulmonary diseases with fibrosis	[X]Other interstitial pulmonary diseases with fibrosis	Hyu5000
6837.0	Diagnosis of Other interstitial pulmonary diseases with fibrosis	Other interstitial pulmonary diseases with fibrosis	Idiopathic fibrosing alveolitis	H563.00
7791.0	Diagnosis of Other interstitial pulmonary diseases with fibrosis	Other interstitial pulmonary diseases with fibrosis	Postinflammatory pulmonary fibrosis	H55..00
7994.0	Diagnosis of Other interstitial pulmonary diseases with fibrosis	Other interstitial pulmonary diseases with fibrosis	O/E - fibrosis of lung	23E5.11

C1475/4089 Other interstitial pulmonary diseases with fibrosis - Secondary care - Diagnoses - ICD10 codes

Rows: 1

Code	Description	Disease	Category
J84.1	Other interstitial pulmonary diseases with fibrosis	Other interstitial pulmonary diseases with fibrosis	Diagnosis of Other interstitial pulmonary diseases with fibrosis

API

To Export Phenotype Details:

Format	API
XML	site_root/api/v1/public/phenotypes/PH276/version/552/detail/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH276/version/552/detail/?format=json
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get details of phenotype details = get_phenotype_detail_by_version('PH276', '552', api_client=client)`

To Export Phenotype Code List:

Format	API
XML	site_root/api/v1/public/phenotypes/PH276/version/552/export/codes/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH276/version/552/export/codes/?format=json
CSV	site_root/phenotypes/PH276/version/552/export/codes/
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get codelists of phenotype codelists = get_phenotype_code_list('PH276', '552', api_client=client)`

Version History

Version ID	Name	Owner	Publish date
552	Other interstitial pulmonary diseases with fibrosis	ieuan.scanlon	2021-10-06	currently shown