Phenotype Library | phenotype: Respiratory failure

Respiratory failure

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

PH279

Version ID

558

Type

Disease or Syndrome

Data Sources

CPRD GOLD , HES Admitted Patient Care data for CPRD GOLD

Valid event data range

01/01/1999 - 01/07/2016

Sex

♀ Female ♂ Male

Agreement Date

2019-05-20

Coding system

Read codes v2 ICD10 codes Med codes

Collections

CALIBER Phenotype Library

Definition

At the specified date, a patient is defined as having had 'Respiratory failure' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Primary care

Other 'Respiratory failure' diagnosis or history of diagnosis during a consultation

OR Secondary care (ICD10)

ALL diagnoses of 'Respiratory failure' or history of diagnosis during a hospitalization

Implementation

PhenoFlow Implementation:

https://kclhi.org/phenoflow/phenotype/download/811

Publications

Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

CSV

JSON

XML

Expand All / Collapse All

C1482/4103 Respiratory failure - Primary care - Read codes v2

Rows: 8

Code	Description	Disease	Medcode	Category
Fy04.00	Sleep-related respiratory failure	Respiratory failure	38686.0	Diagnosis of Respiratory failure
H59..00	Respiratory failure	Respiratory failure	25249.0	Diagnosis of Respiratory failure
H590.00	Acute respiratory failure	Respiratory failure	37961.0	Diagnosis of Respiratory failure
H591.00	Chronic respiratory failure	Respiratory failure	24814.0	Diagnosis of Respiratory failure
H592.00	Chronic type 1 respiratory failure	Respiratory failure	94946.0	Diagnosis of Respiratory failure
H593.00	Chronic type 2 respiratory failure	Respiratory failure	94486.0	Diagnosis of Respiratory failure
R2y1.00	[D]Respiratory failure	Respiratory failure	3959.0	Diagnosis of Respiratory failure
R2y1z00	[D]Respiratory failure NOS	Respiratory failure	15779.0	Diagnosis of Respiratory failure

C1483/4105 Respiratory failure - Primary care - Med codes

Rows: 8

Code	Description	Disease	ReadcodeDescr	Readcode
15779.0	Diagnosis of Respiratory failure	Respiratory failure	[D]Respiratory failure NOS	R2y1z00
24814.0	Diagnosis of Respiratory failure	Respiratory failure	Chronic respiratory failure	H591.00
25249.0	Diagnosis of Respiratory failure	Respiratory failure	Respiratory failure	H59..00
37961.0	Diagnosis of Respiratory failure	Respiratory failure	Acute respiratory failure	H590.00
38686.0	Diagnosis of Respiratory failure	Respiratory failure	Sleep-related respiratory failure	Fy04.00
3959.0	Diagnosis of Respiratory failure	Respiratory failure	[D]Respiratory failure	R2y1.00
94486.0	Diagnosis of Respiratory failure	Respiratory failure	Chronic type 2 respiratory failure	H593.00
94946.0	Diagnosis of Respiratory failure	Respiratory failure	Chronic type 1 respiratory failure	H592.00

C1484/4107 Respiratory failure - Secondary care - Diagnoses - ICD10 codes

Rows: 1

Code	Description	Disease	Category
J96	Respiratory failure, not elsewhere classified	Respiratory failure	Diagnosis of Respiratory failure

API

To Export Phenotype Details:

Format	API
XML	site_root/api/v1/public/phenotypes/PH279/version/558/detail/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH279/version/558/detail/?format=json
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get details of phenotype details = get_phenotype_detail_by_version('PH279', '558', api_client=client)`

To Export Phenotype Code List:

Format	API
XML	site_root/api/v1/public/phenotypes/PH279/version/558/export/codes/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH279/version/558/export/codes/?format=json
CSV	site_root/phenotypes/PH279/version/558/export/codes/
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get codelists of phenotype codelists = get_phenotype_code_list('PH279', '558', api_client=client)`

Version History

Version ID	Name	Owner	Publish date
558	Respiratory failure	ieuan.scanlon	2021-10-06	currently shown