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Respiratory failure

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

Type
Disease or Syndrome
ID
PH279
Version ID
558
Valid event data range
01/01/1999 - 01/07/2016
Sex
Female, Male
Agreement Date
2019-05-20
Coding system
Read codes v2 ICD10 codes Med codes
Tags /Collections
CALIBER Phenotype Library

Definition

At the specified date, a patient is defined as having had 'Respiratory failure' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Primary care

  1. Other 'Respiratory failure' diagnosis or history of diagnosis during a consultation

OR Secondary care (ICD10)

  1. ALL diagnoses of 'Respiratory failure' or history of diagnosis during a hospitalization

Implementation


Publications

  • Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

Rows: 8
Code Description Disease Medcode Category
Fy04.00 Sleep-related respiratory failure Respiratory failure 38686.0 Diagnosis of Respiratory failure
H59..00 Respiratory failure Respiratory failure 25249.0 Diagnosis of Respiratory failure
H590.00 Acute respiratory failure Respiratory failure 37961.0 Diagnosis of Respiratory failure
H591.00 Chronic respiratory failure Respiratory failure 24814.0 Diagnosis of Respiratory failure
H592.00 Chronic type 1 respiratory failure Respiratory failure 94946.0 Diagnosis of Respiratory failure
H593.00 Chronic type 2 respiratory failure Respiratory failure 94486.0 Diagnosis of Respiratory failure
R2y1.00 [D]Respiratory failure Respiratory failure 3959.0 Diagnosis of Respiratory failure
R2y1z00 [D]Respiratory failure NOS Respiratory failure 15779.0 Diagnosis of Respiratory failure
Rows: 8
Code Description Disease ReadcodeDescr Readcode
15779.0 Diagnosis of Respiratory failure Respiratory failure [D]Respiratory failure NOS R2y1z00
24814.0 Diagnosis of Respiratory failure Respiratory failure Chronic respiratory failure H591.00
25249.0 Diagnosis of Respiratory failure Respiratory failure Respiratory failure H59..00
37961.0 Diagnosis of Respiratory failure Respiratory failure Acute respiratory failure H590.00
38686.0 Diagnosis of Respiratory failure Respiratory failure Sleep-related respiratory failure Fy04.00
3959.0 Diagnosis of Respiratory failure Respiratory failure [D]Respiratory failure R2y1.00
94486.0 Diagnosis of Respiratory failure Respiratory failure Chronic type 2 respiratory failure H593.00
94946.0 Diagnosis of Respiratory failure Respiratory failure Chronic type 1 respiratory failure H592.00
Rows: 1
Code Description Disease Category
J96 Respiratory failure, not elsewhere classified Respiratory failure Diagnosis of Respiratory failure

API

To Export Phenotype Details:

Format API
XML site_root/api/v1/public/phenotypes/PH279/version/558/detail/?format=xml
JSON site_root/api/v1/public/phenotypes/PH279/version/558/detail/?format=json
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get details of phenotype

details = get_phenotype_detail_by_version('PH279', '558', api_client=client)

To Export Phenotype Code List:

Format API
XML site_root/api/v1/public/phenotypes/PH279/version/558/export/codes/?format=xml
JSON site_root/api/v1/public/phenotypes/PH279/version/558/export/codes/?format=json
CSV site_root/phenotypes/PH279/version/558/export/codes/
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get codelists of phenotype

codelists = get_phenotype_code_list('PH279', '558', api_client=client)

Version History

Version
ID
Name Owner Publish date
558 Respiratory failure ieuan.scanlon 2021-10-06 currently shown

Export - export all codes into a csv file/JSON/XML for the current phenotype version.

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