Phenotype Library | phenotype: Sarcoidosis

Sarcoidosis

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

PH284

Version ID

568

Type

Disease or Syndrome

Data Sources

CPRD GOLD , HES Admitted Patient Care data for CPRD GOLD

Valid event data range

01/01/1999 - 01/07/2016

Sex

♀ Female ♂ Male

Agreement Date

2019-05-20

Coding system

Read codes v2 ICD10 codes Med codes

Collections

CALIBER Phenotype Library

Definition

At the specified date, a patient is defined as having had 'Sarcoidosis' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Primary care

'Sarcoidosis' diagnosis or history of diagnosis during a consultation

OR Secondary care (ICD10)

ALL diagnoses of 'Sarcoidosis' or history of diagnosis during a hospitalization

Implementation

PhenoFlow Implementation:

https://kclhi.org/phenoflow/phenotype/download/828

Publications

Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

CSV

JSON

XML

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C1498/4135 Sarcoidosis - Primary care - Read codes v2

Rows: 18

Code	Description	Disease	Medcode	Category
AD5..00	Sarcoidosis	Sarcoidosis	3865.0	Diagnosis of Sarcoidosis
AD50.00	Sarcoidosis of lung	Sarcoidosis	33980.0	Diagnosis of Sarcoidosis
AD51.00	Sarcoidosis of lymph nodes	Sarcoidosis	49075.0	Diagnosis of Sarcoidosis
AD52.00	Sarcoidosis of lung with sarcoidosis of lymph nodes	Sarcoidosis	58841.0	Diagnosis of Sarcoidosis
AD53.00	Sarcoidosis of skin	Sarcoidosis	27769.0	Diagnosis of Sarcoidosis
AD53000	Lupus pernio	Sarcoidosis	28952.0	Diagnosis of Sarcoidosis
AD54.00	Sarcoidosis of inferior turbinates	Sarcoidosis	72595.0	Diagnosis of Sarcoidosis
AD55.00	Sarcoid arthropathy	Sarcoidosis	40613.0	Diagnosis of Sarcoidosis
Cyu0600	[X]Sarcoidosis of other and combined sites	Sarcoidosis	73284.0	Diagnosis of Sarcoidosis
F013.00	Meningitis due to sarcoidosis	Sarcoidosis	49454.0	Diagnosis of Sarcoidosis
F326300	Multiple cranial nerve palsies in sarcoidosis	Sarcoidosis	55612.0	Diagnosis of Sarcoidosis
F374900	Polyneuropathy in sarcoidosis	Sarcoidosis	40751.0	Diagnosis of Sarcoidosis
F396500	Myopathy due to sarcoidosis	Sarcoidosis	52519.0	Diagnosis of Sarcoidosis
G558300	Sarcoid heart disease	Sarcoidosis	47037.0	Diagnosis of Sarcoidosis
G5y7.00	Sarcoid myocarditis	Sarcoidosis	34437.0	Diagnosis of Sarcoidosis
H57y200	Pulmonary sarcoidosis	Sarcoidosis	3859.0	Diagnosis of Sarcoidosis
J63A.00	Hepatic granulomas in sarcoidosis	Sarcoidosis	26405.0	Diagnosis of Sarcoidosis
N233200	Myositis in sarcoidosis	Sarcoidosis	47718.0	Diagnosis of Sarcoidosis

C1499/4137 Sarcoidosis - Primary care - Med codes

Rows: 18

Code	Description	Disease	ReadcodeDescr	Readcode
26405.0	Diagnosis of Sarcoidosis	Sarcoidosis	Hepatic granulomas in sarcoidosis	J63A.00
27769.0	Diagnosis of Sarcoidosis	Sarcoidosis	Sarcoidosis of skin	AD53.00
28952.0	Diagnosis of Sarcoidosis	Sarcoidosis	Lupus pernio	AD53000
33980.0	Diagnosis of Sarcoidosis	Sarcoidosis	Sarcoidosis of lung	AD50.00
34437.0	Diagnosis of Sarcoidosis	Sarcoidosis	Sarcoid myocarditis	G5y7.00
3859.0	Diagnosis of Sarcoidosis	Sarcoidosis	Pulmonary sarcoidosis	H57y200
3865.0	Diagnosis of Sarcoidosis	Sarcoidosis	Sarcoidosis	AD5..00
40613.0	Diagnosis of Sarcoidosis	Sarcoidosis	Sarcoid arthropathy	AD55.00
40751.0	Diagnosis of Sarcoidosis	Sarcoidosis	Polyneuropathy in sarcoidosis	F374900
47037.0	Diagnosis of Sarcoidosis	Sarcoidosis	Sarcoid heart disease	G558300
47718.0	Diagnosis of Sarcoidosis	Sarcoidosis	Myositis in sarcoidosis	N233200
49075.0	Diagnosis of Sarcoidosis	Sarcoidosis	Sarcoidosis of lymph nodes	AD51.00
49454.0	Diagnosis of Sarcoidosis	Sarcoidosis	Meningitis due to sarcoidosis	F013.00
52519.0	Diagnosis of Sarcoidosis	Sarcoidosis	Myopathy due to sarcoidosis	F396500
55612.0	Diagnosis of Sarcoidosis	Sarcoidosis	Multiple cranial nerve palsies in sarcoidosis	F326300
58841.0	Diagnosis of Sarcoidosis	Sarcoidosis	Sarcoidosis of lung with sarcoidosis of lymph nodes	AD52.00
72595.0	Diagnosis of Sarcoidosis	Sarcoidosis	Sarcoidosis of inferior turbinates	AD54.00
73284.0	Diagnosis of Sarcoidosis	Sarcoidosis	[X]Sarcoidosis of other and combined sites	Cyu0600

C1500/4139 Sarcoidosis - Secondary care - Diagnoses - ICD10 codes

Rows: 3

Code	Description	Disease	Category
D86	Sarcoidosis	Sarcoidosis	Diagnosis of Sarcoidosis
G53.2	Multiple cranial nerve palsies in sarcoidosis	Sarcoidosis	Diagnosis of Sarcoidosis
M63.3	Myositis in sarcoidosis	Sarcoidosis	Diagnosis of Sarcoidosis

API

To Export Phenotype Details:

Format	API
XML	site_root/api/v1/public/phenotypes/PH284/version/568/detail/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH284/version/568/detail/?format=json
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get details of phenotype details = get_phenotype_detail_by_version('PH284', '568', api_client=client)`

To Export Phenotype Code List:

Format	API
XML	site_root/api/v1/public/phenotypes/PH284/version/568/export/codes/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH284/version/568/export/codes/?format=json
CSV	site_root/phenotypes/PH284/version/568/export/codes/
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get codelists of phenotype codelists = get_phenotype_code_list('PH284', '568', api_client=client)`

Version History

Version ID	Name	Owner	Publish date
568	Sarcoidosis	ieuan.scanlon	2021-10-06	currently shown