Phenotypes > Secondary Malignancy_Lymph Nodes

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Secondary Malignancy_Lymph Nodes

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

Type
Disease or Syndrome
ID
PH289
Version ID
578
Data Sources
CPRD GOLD , HES Admitted Patient Care data for CPRD GOLD
Valid event data range
01/01/1999 - 01/07/2016
Sex
Female, Male
Agreement Date
2019-05-20
Coding system
Read codes v2 ICD10 codes Med codes
Tags /Collections
CALIBER Phenotype Library

Definition

At the specified date, a patient is defined as having had Secondary Malignancy Lymph Nodes IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Primary care

  1. Secondary Malignancy Lymph Nodes diagnosis or history of diagnosis during a consultation

OR Secondary care

  1. ALL diagnoses of Secondary Malignancy Lymph Nodes or history of diagnosis during a hospitalization

Implementation


https://kclhi.org/phenoflow/phenotype/download/841

Publications

  • Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

Expand All  /  Collapse All
Rows: 51
Code Description Disease Medcode Category
B56..00 Secondary and unspecified malignant neoplasm of lymph nodes Secondary Malignancy_Lymph Nodes 9618.0 Diagnosis of Secondary Malignancy_Lymph Nodes
B56..11 Lymph node metastases Secondary Malignancy_Lymph Nodes 7830.0 Diagnosis of Secondary Malignancy_Lymph Nodes
B560.00 Secondary and unspec malig neop lymph nodes head/face/neck Secondary Malignancy_Lymph Nodes 49214.0 Diagnosis of Secondary Malignancy_Lymph Nodes
B560000 Secondary and unspec malig neop of superficial parotid LN Secondary Malignancy_Lymph Nodes 64918.0 Diagnosis of Secondary Malignancy_Lymph Nodes
B560100 Secondary and unspec malignant neoplasm mastoid lymph nodes Secondary Malignancy_Lymph Nodes 66775.0 Diagnosis of Secondary Malignancy_Lymph Nodes
B560200 Secondary and unspec malig neop superficial cervical LN Secondary Malignancy_Lymph Nodes 33395.0 Diagnosis of Secondary Malignancy_Lymph Nodes
B560300 Secondary and unspec malignant neoplasm occipital lymph node Secondary Malignancy_Lymph Nodes 65253.0 Diagnosis of Secondary Malignancy_Lymph Nodes
B560400 Secondary and unspec malig neop deep parotid lymph nodes Secondary Malignancy_Lymph Nodes 92703.0 Diagnosis of Secondary Malignancy_Lymph Nodes
B560500 Secondary and unspec malig neop submandibular lymph nodes Secondary Malignancy_Lymph Nodes 39433.0 Diagnosis of Secondary Malignancy_Lymph Nodes
B560600 Secondary and unspec malig neop of facial lymph nodes Secondary Malignancy_Lymph Nodes 28059.0 Diagnosis of Secondary Malignancy_Lymph Nodes
B560700 Secondary and unspec malig neop submental lymph nodes Secondary Malignancy_Lymph Nodes 38343.0 Diagnosis of Secondary Malignancy_Lymph Nodes
B560800 Secondary and unspec malig neop anterior cervical LN Secondary Malignancy_Lymph Nodes 44627.0 Diagnosis of Secondary Malignancy_Lymph Nodes
B560900 Secondary and unspec malig neop deep cervical LN Secondary Malignancy_Lymph Nodes 68611.0 Diagnosis of Secondary Malignancy_Lymph Nodes
B560z00 Secondary unspec malig neop lymph nodes head/face/neck NOS Secondary Malignancy_Lymph Nodes 67129.0 Diagnosis of Secondary Malignancy_Lymph Nodes
B561.00 Secondary and unspec malig neop intrathoracic lymph nodes Secondary Malignancy_Lymph Nodes 64116.0 Diagnosis of Secondary Malignancy_Lymph Nodes
B561000 Secondary and unspec malig neop internal mammary lymph nodes Secondary Malignancy_Lymph Nodes 37919.0 Diagnosis of Secondary Malignancy_Lymph Nodes
B561100 Secondary and unspec malig neop intercostal lymph nodes Secondary Malignancy_Lymph Nodes 105953.0 Diagnosis of Secondary Malignancy_Lymph Nodes
B561200 Secondary and unspec malig neop diaphragmatic lymph nodes Secondary Malignancy_Lymph Nodes 95378.0 Diagnosis of Secondary Malignancy_Lymph Nodes
B561300 Secondary and unspec malig neop ant mediastinal lymph nodes Secondary Malignancy_Lymph Nodes 25366.0 Diagnosis of Secondary Malignancy_Lymph Nodes
B561400 Secondary and unspec malig neop post mediastinal lymph nodes Secondary Malignancy_Lymph Nodes 55463.0 Diagnosis of Secondary Malignancy_Lymph Nodes
B561500 Secondary and unspec malig neop paratracheal lymph nodes Secondary Malignancy_Lymph Nodes 58692.0 Diagnosis of Secondary Malignancy_Lymph Nodes
B561600 Secondary and unspec malig neop superfic tracheobronchial LN Secondary Malignancy_Lymph Nodes 67797.0 Diagnosis of Secondary Malignancy_Lymph Nodes
B561700 Secondary and unspec malig neop inferior tracheobronchial LN Secondary Malignancy_Lymph Nodes 69392.0 Diagnosis of Secondary Malignancy_Lymph Nodes
B561800 Secondary and unspec malig neop bronchopulmonary lymph nodes Secondary Malignancy_Lymph Nodes 62124.0 Diagnosis of Secondary Malignancy_Lymph Nodes
B561900 Secondary and unspec malig neop pulmonary lymph nodes Secondary Malignancy_Lymph Nodes 52190.0 Diagnosis of Secondary Malignancy_Lymph Nodes
B561z00 Secondary and unspec malig neop intrathoracic LN NOS Secondary Malignancy_Lymph Nodes 93716.0 Diagnosis of Secondary Malignancy_Lymph Nodes
B562.00 Secondary and unspec malig neop intra-abdominal lymph nodes Secondary Malignancy_Lymph Nodes 52736.0 Diagnosis of Secondary Malignancy_Lymph Nodes
B562000 Secondary and unspec malig neop coeliac lymph nodes Secondary Malignancy_Lymph Nodes 41691.0 Diagnosis of Secondary Malignancy_Lymph Nodes
B562100 Secondary and unspec malig neop superficial mesenteric LN Secondary Malignancy_Lymph Nodes 72713.0 Diagnosis of Secondary Malignancy_Lymph Nodes
B562200 Secondary and unspec malig neop inferior mesenteric LN Secondary Malignancy_Lymph Nodes 61677.0 Diagnosis of Secondary Malignancy_Lymph Nodes
B562300 Secondary and unspec malig neop common iliac lymph nodes Secondary Malignancy_Lymph Nodes 18658.0 Diagnosis of Secondary Malignancy_Lymph Nodes
B562400 Secondary and unspec malig neop external iliac lymph nodes Secondary Malignancy_Lymph Nodes 69132.0 Diagnosis of Secondary Malignancy_Lymph Nodes
B562z00 Secondary and unspec malig neop intra-abdominal LN NOS Secondary Malignancy_Lymph Nodes 44931.0 Diagnosis of Secondary Malignancy_Lymph Nodes
B563.00 Secondary and unspec malig neop axilla and upper limb LN Secondary Malignancy_Lymph Nodes 50199.0 Diagnosis of Secondary Malignancy_Lymph Nodes
B563000 Secondary and unspec malig neop axillary lymph nodes Secondary Malignancy_Lymph Nodes 37540.0 Diagnosis of Secondary Malignancy_Lymph Nodes
B563100 Secondary and unspec malig neop supratrochlear lymph nodes Secondary Malignancy_Lymph Nodes 98626.0 Diagnosis of Secondary Malignancy_Lymph Nodes
B563200 Secondary and unspec malig neop infraclavicular lymph nodes Secondary Malignancy_Lymph Nodes 50904.0 Diagnosis of Secondary Malignancy_Lymph Nodes
B563300 Secondary and unspec malig neop pectoral lymph nodes Secondary Malignancy_Lymph Nodes 46409.0 Diagnosis of Secondary Malignancy_Lymph Nodes
B563z00 Secondary and unspec malig neop axilla and upper limb LN NOS Secondary Malignancy_Lymph Nodes 73538.0 Diagnosis of Secondary Malignancy_Lymph Nodes
B564.00 Secondary and unspec malig neop inguinal and lower limb LN Secondary Malignancy_Lymph Nodes 63915.0 Diagnosis of Secondary Malignancy_Lymph Nodes
B564000 Secondary and unspec malig neop superficial inguinal LN Secondary Malignancy_Lymph Nodes 54278.0 Diagnosis of Secondary Malignancy_Lymph Nodes
B564100 Secondary and unspec malig neop deep inguinal lymph nodes Secondary Malignancy_Lymph Nodes 61289.0 Diagnosis of Secondary Malignancy_Lymph Nodes
B564z00 Secondary and unspec malig neop of inguinal and leg LN NOS Secondary Malignancy_Lymph Nodes 70747.0 Diagnosis of Secondary Malignancy_Lymph Nodes
B565.00 Secondary and unspec malig neop intrapelvic lymph nodes Secondary Malignancy_Lymph Nodes 6701.0 Diagnosis of Secondary Malignancy_Lymph Nodes
B565000 Secondary and unspec malig neop internal iliac lymph nodes Secondary Malignancy_Lymph Nodes 84368.0 Diagnosis of Secondary Malignancy_Lymph Nodes
B565200 Secondary and unspec malig neop circumflex iliac LN Secondary Malignancy_Lymph Nodes 101662.0 Diagnosis of Secondary Malignancy_Lymph Nodes
B565300 Secondary and unspec malig neop sacral lymph nodes Secondary Malignancy_Lymph Nodes 47366.0 Diagnosis of Secondary Malignancy_Lymph Nodes
B565z00 Secondary and unspec malig neop intrapelvic LN NOS Secondary Malignancy_Lymph Nodes 72803.0 Diagnosis of Secondary Malignancy_Lymph Nodes
B56y.00 Secondary and unspec malig neop lymph nodes multiple sites Secondary Malignancy_Lymph Nodes 20159.0 Diagnosis of Secondary Malignancy_Lymph Nodes
B56z.00 Secondary and unspec malig neop lymph nodes NOS Secondary Malignancy_Lymph Nodes 15507.0 Diagnosis of Secondary Malignancy_Lymph Nodes
ByuC200 [X]2ndry+unspcf malignant neoplasm lymph nodes/multi regions Secondary Malignancy_Lymph Nodes 66163.0 Diagnosis of Secondary Malignancy_Lymph Nodes
Rows: 51
Code Description Disease ReadcodeDescr Readcode
101662.0 Diagnosis of Secondary Malignancy_Lymph Nodes Secondary Malignancy_Lymph Nodes Secondary and unspec malig neop circumflex iliac LN B565200
105953.0 Diagnosis of Secondary Malignancy_Lymph Nodes Secondary Malignancy_Lymph Nodes Secondary and unspec malig neop intercostal lymph nodes B561100
15507.0 Diagnosis of Secondary Malignancy_Lymph Nodes Secondary Malignancy_Lymph Nodes Secondary and unspec malig neop lymph nodes NOS B56z.00
18658.0 Diagnosis of Secondary Malignancy_Lymph Nodes Secondary Malignancy_Lymph Nodes Secondary and unspec malig neop common iliac lymph nodes B562300
20159.0 Diagnosis of Secondary Malignancy_Lymph Nodes Secondary Malignancy_Lymph Nodes Secondary and unspec malig neop lymph nodes multiple sites B56y.00
25366.0 Diagnosis of Secondary Malignancy_Lymph Nodes Secondary Malignancy_Lymph Nodes Secondary and unspec malig neop ant mediastinal lymph nodes B561300
28059.0 Diagnosis of Secondary Malignancy_Lymph Nodes Secondary Malignancy_Lymph Nodes Secondary and unspec malig neop of facial lymph nodes B560600
33395.0 Diagnosis of Secondary Malignancy_Lymph Nodes Secondary Malignancy_Lymph Nodes Secondary and unspec malig neop superficial cervical LN B560200
37540.0 Diagnosis of Secondary Malignancy_Lymph Nodes Secondary Malignancy_Lymph Nodes Secondary and unspec malig neop axillary lymph nodes B563000
37919.0 Diagnosis of Secondary Malignancy_Lymph Nodes Secondary Malignancy_Lymph Nodes Secondary and unspec malig neop internal mammary lymph nodes B561000
38343.0 Diagnosis of Secondary Malignancy_Lymph Nodes Secondary Malignancy_Lymph Nodes Secondary and unspec malig neop submental lymph nodes B560700
39433.0 Diagnosis of Secondary Malignancy_Lymph Nodes Secondary Malignancy_Lymph Nodes Secondary and unspec malig neop submandibular lymph nodes B560500
41691.0 Diagnosis of Secondary Malignancy_Lymph Nodes Secondary Malignancy_Lymph Nodes Secondary and unspec malig neop coeliac lymph nodes B562000
44627.0 Diagnosis of Secondary Malignancy_Lymph Nodes Secondary Malignancy_Lymph Nodes Secondary and unspec malig neop anterior cervical LN B560800
44931.0 Diagnosis of Secondary Malignancy_Lymph Nodes Secondary Malignancy_Lymph Nodes Secondary and unspec malig neop intra-abdominal LN NOS B562z00
46409.0 Diagnosis of Secondary Malignancy_Lymph Nodes Secondary Malignancy_Lymph Nodes Secondary and unspec malig neop pectoral lymph nodes B563300
47366.0 Diagnosis of Secondary Malignancy_Lymph Nodes Secondary Malignancy_Lymph Nodes Secondary and unspec malig neop sacral lymph nodes B565300
49214.0 Diagnosis of Secondary Malignancy_Lymph Nodes Secondary Malignancy_Lymph Nodes Secondary and unspec malig neop lymph nodes head/face/neck B560.00
50199.0 Diagnosis of Secondary Malignancy_Lymph Nodes Secondary Malignancy_Lymph Nodes Secondary and unspec malig neop axilla and upper limb LN B563.00
50904.0 Diagnosis of Secondary Malignancy_Lymph Nodes Secondary Malignancy_Lymph Nodes Secondary and unspec malig neop infraclavicular lymph nodes B563200
52190.0 Diagnosis of Secondary Malignancy_Lymph Nodes Secondary Malignancy_Lymph Nodes Secondary and unspec malig neop pulmonary lymph nodes B561900
52736.0 Diagnosis of Secondary Malignancy_Lymph Nodes Secondary Malignancy_Lymph Nodes Secondary and unspec malig neop intra-abdominal lymph nodes B562.00
54278.0 Diagnosis of Secondary Malignancy_Lymph Nodes Secondary Malignancy_Lymph Nodes Secondary and unspec malig neop superficial inguinal LN B564000
55463.0 Diagnosis of Secondary Malignancy_Lymph Nodes Secondary Malignancy_Lymph Nodes Secondary and unspec malig neop post mediastinal lymph nodes B561400
58692.0 Diagnosis of Secondary Malignancy_Lymph Nodes Secondary Malignancy_Lymph Nodes Secondary and unspec malig neop paratracheal lymph nodes B561500
61289.0 Diagnosis of Secondary Malignancy_Lymph Nodes Secondary Malignancy_Lymph Nodes Secondary and unspec malig neop deep inguinal lymph nodes B564100
61677.0 Diagnosis of Secondary Malignancy_Lymph Nodes Secondary Malignancy_Lymph Nodes Secondary and unspec malig neop inferior mesenteric LN B562200
62124.0 Diagnosis of Secondary Malignancy_Lymph Nodes Secondary Malignancy_Lymph Nodes Secondary and unspec malig neop bronchopulmonary lymph nodes B561800
63915.0 Diagnosis of Secondary Malignancy_Lymph Nodes Secondary Malignancy_Lymph Nodes Secondary and unspec malig neop inguinal and lower limb LN B564.00
64116.0 Diagnosis of Secondary Malignancy_Lymph Nodes Secondary Malignancy_Lymph Nodes Secondary and unspec malig neop intrathoracic lymph nodes B561.00
64918.0 Diagnosis of Secondary Malignancy_Lymph Nodes Secondary Malignancy_Lymph Nodes Secondary and unspec malig neop of superficial parotid LN B560000
65253.0 Diagnosis of Secondary Malignancy_Lymph Nodes Secondary Malignancy_Lymph Nodes Secondary and unspec malignant neoplasm occipital lymph node B560300
66163.0 Diagnosis of Secondary Malignancy_Lymph Nodes Secondary Malignancy_Lymph Nodes [X]2ndry+unspcf malignant neoplasm lymph nodes/multi regions ByuC200
66775.0 Diagnosis of Secondary Malignancy_Lymph Nodes Secondary Malignancy_Lymph Nodes Secondary and unspec malignant neoplasm mastoid lymph nodes B560100
6701.0 Diagnosis of Secondary Malignancy_Lymph Nodes Secondary Malignancy_Lymph Nodes Secondary and unspec malig neop intrapelvic lymph nodes B565.00
67129.0 Diagnosis of Secondary Malignancy_Lymph Nodes Secondary Malignancy_Lymph Nodes Secondary unspec malig neop lymph nodes head/face/neck NOS B560z00
67797.0 Diagnosis of Secondary Malignancy_Lymph Nodes Secondary Malignancy_Lymph Nodes Secondary and unspec malig neop superfic tracheobronchial LN B561600
68611.0 Diagnosis of Secondary Malignancy_Lymph Nodes Secondary Malignancy_Lymph Nodes Secondary and unspec malig neop deep cervical LN B560900
69132.0 Diagnosis of Secondary Malignancy_Lymph Nodes Secondary Malignancy_Lymph Nodes Secondary and unspec malig neop external iliac lymph nodes B562400
69392.0 Diagnosis of Secondary Malignancy_Lymph Nodes Secondary Malignancy_Lymph Nodes Secondary and unspec malig neop inferior tracheobronchial LN B561700
70747.0 Diagnosis of Secondary Malignancy_Lymph Nodes Secondary Malignancy_Lymph Nodes Secondary and unspec malig neop of inguinal and leg LN NOS B564z00
72713.0 Diagnosis of Secondary Malignancy_Lymph Nodes Secondary Malignancy_Lymph Nodes Secondary and unspec malig neop superficial mesenteric LN B562100
72803.0 Diagnosis of Secondary Malignancy_Lymph Nodes Secondary Malignancy_Lymph Nodes Secondary and unspec malig neop intrapelvic LN NOS B565z00
73538.0 Diagnosis of Secondary Malignancy_Lymph Nodes Secondary Malignancy_Lymph Nodes Secondary and unspec malig neop axilla and upper limb LN NOS B563z00
7830.0 Diagnosis of Secondary Malignancy_Lymph Nodes Secondary Malignancy_Lymph Nodes Lymph node metastases B56..11
84368.0 Diagnosis of Secondary Malignancy_Lymph Nodes Secondary Malignancy_Lymph Nodes Secondary and unspec malig neop internal iliac lymph nodes B565000
92703.0 Diagnosis of Secondary Malignancy_Lymph Nodes Secondary Malignancy_Lymph Nodes Secondary and unspec malig neop deep parotid lymph nodes B560400
93716.0 Diagnosis of Secondary Malignancy_Lymph Nodes Secondary Malignancy_Lymph Nodes Secondary and unspec malig neop intrathoracic LN NOS B561z00
95378.0 Diagnosis of Secondary Malignancy_Lymph Nodes Secondary Malignancy_Lymph Nodes Secondary and unspec malig neop diaphragmatic lymph nodes B561200
9618.0 Diagnosis of Secondary Malignancy_Lymph Nodes Secondary Malignancy_Lymph Nodes Secondary and unspecified malignant neoplasm of lymph nodes B56..00
98626.0 Diagnosis of Secondary Malignancy_Lymph Nodes Secondary Malignancy_Lymph Nodes Secondary and unspec malig neop supratrochlear lymph nodes B563100
Rows: 1
Code Description Disease Category
C77 Secondary and unspecified malignant neoplasm of lymph nodes Secondary Malignancy_Lymph Nodes Diagnosis of Secondary Malignancy_Lymph Nodes

API

To Export Phenotype Details:

Format API
XML site_root/api/v1/public/phenotypes/PH289/version/578/detail/?format=xml
JSON site_root/api/v1/public/phenotypes/PH289/version/578/detail/?format=json
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get details of phenotype

details = get_phenotype_detail_by_version('PH289', '578', api_client=client)

To Export Phenotype Code List:

Format API
XML site_root/api/v1/public/phenotypes/PH289/version/578/export/codes/?format=xml
JSON site_root/api/v1/public/phenotypes/PH289/version/578/export/codes/?format=json
CSV site_root/phenotypes/PH289/version/578/export/codes/
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get codelists of phenotype

codelists = get_phenotype_code_list('PH289', '578', api_client=client)

Version History

Version
ID		 Name Owner Publish date
578 Secondary Malignancy_Lymph Nodes ieuan.scanlon 2021-10-06 currently shown

Export - export all codes into a csv file/JSON/XML for the current phenotype version.

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