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Secondary Malignancy_Adrenal gland

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

Type
Disease or Syndrome
ID
PH290
Version ID
580
Valid event data range
01/01/1999 - 01/07/2016
Sex
Female, Male
Agreement Date
2019-05-20
Coding system
Read codes v2 ICD10 codes Med codes
Tags /Collections
CALIBER Phenotype Library

Definition

At the specified date, a patient is defined as having had Secondary Malignancy Adrenal gland IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Primary care

  1. Secondary Malignancy Adrenal gland diagnosis or history of diagnosis during a consultation

OR Secondary care

  1. ALL diagnoses of Secondary Malignancy Adrenal gland or history of diagnosis during a hospitalization

Implementation


Publications

  • Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

Rows: 1
Code Description Disease Medcode Category
B587.00 Secondary malignant neoplasm of adrenal gland Secondary Malignancy_Adrenal gland 36401.0 Diagnosis of Secondary Malignancy_Adrenal gland
Rows: 1
Code Description Disease ReadcodeDescr Readcode
36401.0 Diagnosis of Secondary Malignancy_Adrenal gland Secondary Malignancy_Adrenal gland Secondary malignant neoplasm of adrenal gland B587.00
Rows: 1
Code Description Disease Category
C79.7 Secondary malignant neoplasm of adrenal gland Secondary Malignancy_Adrenal gland Diagnosis of Secondary Malignancy_Adrenal gland

API

To Export Phenotype Details:

Format API
XML site_root/api/v1/public/phenotypes/PH290/version/580/detail/?format=xml
JSON site_root/api/v1/public/phenotypes/PH290/version/580/detail/?format=json
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get details of phenotype

details = get_phenotype_detail_by_version('PH290', '580', api_client=client)

To Export Phenotype Code List:

Format API
XML site_root/api/v1/public/phenotypes/PH290/version/580/export/codes/?format=xml
JSON site_root/api/v1/public/phenotypes/PH290/version/580/export/codes/?format=json
CSV site_root/phenotypes/PH290/version/580/export/codes/
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get codelists of phenotype

codelists = get_phenotype_code_list('PH290', '580', api_client=client)

Version History

Version
ID
Name Owner Publish date
580 Secondary Malignancy_Adrenal gland ieuan.scanlon 2021-10-06 currently shown

Export - export all codes into a csv file/JSON/XML for the current phenotype version.

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