Phenotype Library | phenotype: Secondary Malignancy

Secondary Malignancy_Bone

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

PH291

Version ID

582

Type

Disease or Syndrome

Data Sources

CPRD GOLD , HES Admitted Patient Care data for CPRD GOLD

Valid event data range

01/01/1999 - 01/07/2016

Sex

♀ Female ♂ Male

Agreement Date

2019-05-20

Coding system

Read codes v2 ICD10 codes Med codes

Collections

CALIBER Phenotype Library

Definition

At the specified date, a patient is defined as having had Secondary Malignancy Bone IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Primary care

Secondary Malignancy Bone diagnosis or history of diagnosis during a consultation

OR Secondary care

ALL diagnoses of Secondary Malignancy Bone or history of diagnosis during a hospitalization

Implementation

PhenoFlow Implementation:

https://kclhi.org/phenoflow/phenotype/download/847

Publications

Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

CSV

JSON

XML

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C1519/4177 Secondary Malignancy_Bone - Primary care - Read codes v2

Rows: 2

Code	Description	Disease	Medcode	Category
B585.00	Secondary malignant neoplasm of bone and bone marrow	Secondary Malignancy_Bone	7654.0	Diagnosis of Secondary Malignancy_Bone
B585000	Pathological fracture due to metastatic bone disease	Secondary Malignancy_Bone	18676.0	Diagnosis of Secondary Malignancy_Bone

C1520/4179 Secondary Malignancy_Bone - Primary care - Med codes

Rows: 2

Code	Description	Disease	ReadcodeDescr	Readcode
18676.0	Diagnosis of Secondary Malignancy_Bone	Secondary Malignancy_Bone	Pathological fracture due to metastatic bone disease	B585000
7654.0	Diagnosis of Secondary Malignancy_Bone	Secondary Malignancy_Bone	Secondary malignant neoplasm of bone and bone marrow	B585.00

C1521/4181 Secondary Malignancy_Bone - Secondary care - Diagnoses - ICD10 codes

Rows: 1

Code	Description	Disease	Category
C79.5	Secondary malignant neoplasm of bone and bone marrow	Secondary Malignancy_Bone	Diagnosis of Secondary Malignancy_Bone

API

To Export Phenotype Details:

Format	API
XML	site_root/api/v1/public/phenotypes/PH291/version/582/detail/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH291/version/582/detail/?format=json
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get details of phenotype details = get_phenotype_detail_by_version('PH291', '582', api_client=client)`

To Export Phenotype Code List:

Format	API
XML	site_root/api/v1/public/phenotypes/PH291/version/582/export/codes/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH291/version/582/export/codes/?format=json
CSV	site_root/phenotypes/PH291/version/582/export/codes/
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get codelists of phenotype codelists = get_phenotype_code_list('PH291', '582', api_client=client)`

Version History

Version ID	Name	Owner	Publish date
582	Secondary Malignancy_Bone	ieuan.scanlon	2021-10-06	currently shown