Print

Secondary Malignancy_Bone

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

Type
Disease or Syndrome
ID
PH291
Version ID
582
Valid event data range
01/01/1999 - 01/07/2016
Sex
Female, Male
Agreement Date
2019-05-20
Coding system
Read codes v2 ICD10 codes Med codes
Tags /Collections
CALIBER Phenotype Library

Definition

At the specified date, a patient is defined as having had Secondary Malignancy Bone IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Primary care

  1. Secondary Malignancy Bone diagnosis or history of diagnosis during a consultation

OR Secondary care

  1. ALL diagnoses of Secondary Malignancy Bone or history of diagnosis during a hospitalization

Implementation


Publications

  • Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

Rows: 2
Code Description Disease Medcode Category
B585.00 Secondary malignant neoplasm of bone and bone marrow Secondary Malignancy_Bone 7654.0 Diagnosis of Secondary Malignancy_Bone
B585000 Pathological fracture due to metastatic bone disease Secondary Malignancy_Bone 18676.0 Diagnosis of Secondary Malignancy_Bone
Rows: 2
Code Description Disease ReadcodeDescr Readcode
18676.0 Diagnosis of Secondary Malignancy_Bone Secondary Malignancy_Bone Pathological fracture due to metastatic bone disease B585000
7654.0 Diagnosis of Secondary Malignancy_Bone Secondary Malignancy_Bone Secondary malignant neoplasm of bone and bone marrow B585.00
Rows: 1
Code Description Disease Category
C79.5 Secondary malignant neoplasm of bone and bone marrow Secondary Malignancy_Bone Diagnosis of Secondary Malignancy_Bone

API

To Export Phenotype Details:

Format API
XML site_root/api/v1/public/phenotypes/PH291/version/582/detail/?format=xml
JSON site_root/api/v1/public/phenotypes/PH291/version/582/detail/?format=json
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get details of phenotype

details = get_phenotype_detail_by_version('PH291', '582', api_client=client)

To Export Phenotype Code List:

Format API
XML site_root/api/v1/public/phenotypes/PH291/version/582/export/codes/?format=xml
JSON site_root/api/v1/public/phenotypes/PH291/version/582/export/codes/?format=json
CSV site_root/phenotypes/PH291/version/582/export/codes/
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get codelists of phenotype

codelists = get_phenotype_code_list('PH291', '582', api_client=client)

Version History

Version
ID
Name Owner Publish date
582 Secondary Malignancy_Bone ieuan.scanlon 2021-10-06 currently shown

Export - export all codes into a csv file/JSON/XML for the current phenotype version.

Print - Print page.