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Secondary Malignancy_Brain, Other CNS and Intracranial

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

Type
Disease or Syndrome
ID
PH293
Version ID
586
Valid event data range
01/01/1999 - 01/07/2016
Sex
Female, Male
Agreement Date
2019-05-20
Coding system
Read codes v2 ICD10 codes Med codes
Tags /Collections
CALIBER Phenotype Library

Definition

At the specified date, a patient is defined as having had Secondary Malignancy Brain, Other CNS and Intracranial IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Primary care

  1. Secondary Malignancy Brain, Other CNS and Intracranial diagnosis or history of diagnosis during a consultation

OR Secondary care

  1. ALL diagnoses of Secondary Malignancy Brain, Other CNS and Intracranial or history of diagnosis during a hospitalization

Publications

  • Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

Rows: 5
Code Description Disease Medcode Category
B583.00 Secondary malignant neoplasm of brain and spinal cord Secondary Malignancy_Brain, Other CNS and Intracranial 33843.0 Diagnosis of Secondary Malignancy_Brain, Other CNS and Intracranial
B583000 Secondary malignant neoplasm of brain Secondary Malignancy_Brain, Other CNS and Intracranial 5198.0 Diagnosis of Secondary Malignancy_Brain, Other CNS and Intracranial
B583100 Secondary malignant neoplasm of spinal cord Secondary Malignancy_Brain, Other CNS and Intracranial 38918.0 Diagnosis of Secondary Malignancy_Brain, Other CNS and Intracranial
B583200 Cerebral metastasis Secondary Malignancy_Brain, Other CNS and Intracranial 5199.0 Diagnosis of Secondary Malignancy_Brain, Other CNS and Intracranial
B583z00 Secondary malignant neoplasm of brain or spinal cord NOS Secondary Malignancy_Brain, Other CNS and Intracranial 59375.0 Diagnosis of Secondary Malignancy_Brain, Other CNS and Intracranial
Rows: 5
Code Description Disease ReadcodeDescr Readcode
33843.0 Diagnosis of Secondary Malignancy_Brain, Other CNS and Intracranial Secondary Malignancy_Brain, Other CNS and Intracranial Secondary malignant neoplasm of brain and spinal cord B583.00
38918.0 Diagnosis of Secondary Malignancy_Brain, Other CNS and Intracranial Secondary Malignancy_Brain, Other CNS and Intracranial Secondary malignant neoplasm of spinal cord B583100
5198.0 Diagnosis of Secondary Malignancy_Brain, Other CNS and Intracranial Secondary Malignancy_Brain, Other CNS and Intracranial Secondary malignant neoplasm of brain B583000
5199.0 Diagnosis of Secondary Malignancy_Brain, Other CNS and Intracranial Secondary Malignancy_Brain, Other CNS and Intracranial Cerebral metastasis B583200
59375.0 Diagnosis of Secondary Malignancy_Brain, Other CNS and Intracranial Secondary Malignancy_Brain, Other CNS and Intracranial Secondary malignant neoplasm of brain or spinal cord NOS B583z00
Rows: 2
Code Description Disease Category
C79.3 Secondary malignant neoplasm of brain and cerebral meninges Secondary Malignancy_Brain, Other CNS and Intracranial Diagnosis of Secondary Malignancy_Brain, Other CNS and Intracranial
C79.4 Secondary malignant neoplasm of other and unspecified parts of nervous system Secondary Malignancy_Brain, Other CNS and Intracranial Diagnosis of Secondary Malignancy_Brain, Other CNS and Intracranial

API

To Export Phenotype Details:

Format API
XML site_root/api/v1/public/phenotypes/PH293/version/586/detail/?format=xml
JSON site_root/api/v1/public/phenotypes/PH293/version/586/detail/?format=json
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get details of phenotype

details = get_phenotype_detail_by_version('PH293', '586', api_client=client)

To Export Phenotype Code List:

Format API
XML site_root/api/v1/public/phenotypes/PH293/version/586/export/codes/?format=xml
JSON site_root/api/v1/public/phenotypes/PH293/version/586/export/codes/?format=json
CSV site_root/phenotypes/PH293/version/586/export/codes/
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get codelists of phenotype

codelists = get_phenotype_code_list('PH293', '586', api_client=client)

Version History

Version
ID
Name Owner Publish date
586 Secondary Malignancy_Brain, Other CNS and Intracranial ieuan.scanlon 2021-10-06 currently shown

Export - export all codes into a csv file/JSON/XML for the current phenotype version.

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