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Secondary malignancy_Liver and intrahepatic bile duct

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

Type
Disease or Syndrome
ID
PH294
Version ID
588
Valid event data range
01/01/1999 - 01/07/2016
Sex
Female, Male
Agreement Date
2019-05-20
Coding system
Read codes v2 ICD10 codes Med codes
Tags /Collections
CALIBER Phenotype Library

Definition

At the specified date, a patient is defined as having had Secondary malignancy Liver and intrahepatic bile duct IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Primary care

  1. Secondary malignancy Liver and intrahepatic bile duct diagnosis or history of diagnosis during a consultation

OR Secondary care

  1. ALL diagnoses of Secondary malignancy Liver and intrahepatic bile duct or history of diagnosis during a hospitalization

Implementation


Publications

  • Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

Rows: 3
Code Description Disease Medcode Category
B153.00 Secondary malignant neoplasm of liver Secondary malignancy_Liver and intrahepatic bile duct 36147.0 Diagnosis of Secondary malignancy_Liver and intrahepatic bile duct
B577.00 Secondary malignant neoplasm of liver Secondary malignancy_Liver and intrahepatic bile duct 15103.0 Diagnosis of Secondary malignancy_Liver and intrahepatic bile duct
B577.11 Liver metastases Secondary malignancy_Liver and intrahepatic bile duct 4403.0 Diagnosis of Secondary malignancy_Liver and intrahepatic bile duct
Rows: 3
Code Description Disease ReadcodeDescr Readcode
15103.0 Diagnosis of Secondary malignancy_Liver and intrahepatic bile duct Secondary malignancy_Liver and intrahepatic bile duct Secondary malignant neoplasm of liver B577.00
36147.0 Diagnosis of Secondary malignancy_Liver and intrahepatic bile duct Secondary malignancy_Liver and intrahepatic bile duct Secondary malignant neoplasm of liver B153.00
4403.0 Diagnosis of Secondary malignancy_Liver and intrahepatic bile duct Secondary malignancy_Liver and intrahepatic bile duct Liver metastases B577.11
Rows: 1
Code Description Disease Category
C78.7 Secondary malignant neoplasm of liver and intrahepatic bile duct Secondary malignancy_Liver and intrahepatic bile duct Diagnosis of Secondary malignancy_Liver and intrahepatic bile duct

API

To Export Phenotype Details:

Format API
XML site_root/api/v1/public/phenotypes/PH294/version/588/detail/?format=xml
JSON site_root/api/v1/public/phenotypes/PH294/version/588/detail/?format=json
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get details of phenotype

details = get_phenotype_detail_by_version('PH294', '588', api_client=client)

To Export Phenotype Code List:

Format API
XML site_root/api/v1/public/phenotypes/PH294/version/588/export/codes/?format=xml
JSON site_root/api/v1/public/phenotypes/PH294/version/588/export/codes/?format=json
CSV site_root/phenotypes/PH294/version/588/export/codes/
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get codelists of phenotype

codelists = get_phenotype_code_list('PH294', '588', api_client=client)

Version History

Version
ID
Name Owner Publish date
588 Secondary malignancy_Liver and intrahepatic bile duct ieuan.scanlon 2021-10-06 currently shown

Export - export all codes into a csv file/JSON/XML for the current phenotype version.

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