Phenotypes > Secondary Malignancy_Other organs

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Secondary Malignancy_Other organs

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

ID
PH297
Version ID
594
Type
Disease or Syndrome
Data Sources
CPRD GOLD , HES Admitted Patient Care data for CPRD GOLD
Valid event data range
01/01/1999 - 01/07/2016
Sex
♀  Female ♂  Male
Agreement Date
2019-05-20
Coding system
Read codes v2 ICD10 codes Med codes
Collections
CALIBER Phenotype Library
Tags
No tags

Definition

At the specified date, a patient is defined as having had Secondary Malignancy Other organs IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Primary care

  1. Secondary Malignancy Other organs diagnosis or history of diagnosis during a consultation

OR

  1. Secondary Malignancy Other organs possible diagnosis during a consultation IF NO record satisfying criteria for Secondary Malignancy of any other organ OR Secondary care

  2. ALL diagnoses of Secondary Malignancy Other organs or history of diagnosis during a hospitalization

  3. ALL possible diagnosis of Secondary Malignancy Other organs during a hospitalization IF NO record satisfying criteria for Secondary Malignancy of any other organ

Implementation


https://kclhi.org/phenoflow/phenotype/download/865

Publications

  • Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

Expand All  /  Collapse All
Rows: 59
Code Description Disease Medcode Category
1D18.00 Pain from metastases Secondary Malignancy_Other organs 8600.0 Possible diagnosis of Secondary Malignancy_Other organs
5136.00 X-ray metastasis control Secondary Malignancy_Other organs 48991.0 Possible diagnosis of Secondary Malignancy_Other organs
B57..00 Secondary malig neop of respiratory and digestive systems Secondary Malignancy_Other organs 35053.0 Possible diagnosis of Secondary Malignancy_Other organs
B57..11 Metastases of respiratory and/or digestive systems Secondary Malignancy_Other organs 6471.0 Possible diagnosis of Secondary Malignancy_Other organs
B57..12 Secondary carcinoma of respiratory and/or digestive systems Secondary Malignancy_Other organs 24301.0 Possible diagnosis of Secondary Malignancy_Other organs
B571.00 Secondary malignant neoplasm of mediastinum Secondary Malignancy_Other organs 51551.0 Diagnosis of Secondary Malignancy_Other organs
B573.00 Secondary malignant neoplasm of other respiratory organs Secondary Malignancy_Other organs 62584.0 Possible diagnosis of Secondary Malignancy_Other organs
B57y.00 Secondary malignant neoplasm of other digestive organ Secondary Malignancy_Other organs 56345.0 Possible diagnosis of Secondary Malignancy_Other organs
B57z.00 Secondary malig neop of respiratory or digestive system NOS Secondary Malignancy_Other organs 66083.0 Possible diagnosis of Secondary Malignancy_Other organs
B58..00 Secondary malignant neoplasm of other specified sites Secondary Malignancy_Other organs 5842.0 Possible diagnosis of Secondary Malignancy_Other organs
B58..11 Secondary carcinoma of other specified sites Secondary Malignancy_Other organs 27651.0 Possible diagnosis of Secondary Malignancy_Other organs
B580.00 Secondary malignant neoplasm of kidney Secondary Malignancy_Other organs 1952.0 Diagnosis of Secondary Malignancy_Other organs
B581.00 Secondary malignant neoplasm of other urinary organs Secondary Malignancy_Other organs 73213.0 Diagnosis of Secondary Malignancy_Other organs
B581000 Secondary malignant neoplasm of ureter Secondary Malignancy_Other organs 60134.0 Diagnosis of Secondary Malignancy_Other organs
B581100 Secondary malignant neoplasm of bladder Secondary Malignancy_Other organs 22146.0 Diagnosis of Secondary Malignancy_Other organs
B581200 Secondary malignant neoplasm of urethra Secondary Malignancy_Other organs 53528.0 Diagnosis of Secondary Malignancy_Other organs
B581z00 Secondary malignant neoplasm of other urinary organ NOS Secondary Malignancy_Other organs 62828.0 Diagnosis of Secondary Malignancy_Other organs
B582.00 Secondary malignant neoplasm of skin Secondary Malignancy_Other organs 19945.0 Diagnosis of Secondary Malignancy_Other organs
B582000 Secondary malignant neoplasm of skin of head Secondary Malignancy_Other organs 43930.0 Diagnosis of Secondary Malignancy_Other organs
B582100 Secondary malignant neoplasm of skin of face Secondary Malignancy_Other organs 100296.0 Diagnosis of Secondary Malignancy_Other organs
B582200 Secondary malignant neoplasm of skin of neck Secondary Malignancy_Other organs 35999.0 Diagnosis of Secondary Malignancy_Other organs
B582300 Secondary malignant neoplasm of skin of trunk Secondary Malignancy_Other organs 41144.0 Diagnosis of Secondary Malignancy_Other organs
B582400 Secondary malignant neoplasm of skin of shoulder and arm Secondary Malignancy_Other organs 63896.0 Diagnosis of Secondary Malignancy_Other organs
B582500 Secondary malignant neoplasm of skin of hip and leg Secondary Malignancy_Other organs 48828.0 Diagnosis of Secondary Malignancy_Other organs
B582600 Secondary malignant neoplasm of skin of breast Secondary Malignancy_Other organs 9505.0 Diagnosis of Secondary Malignancy_Other organs
B582z00 Secondary malignant neoplasm of skin NOS Secondary Malignancy_Other organs 55096.0 Diagnosis of Secondary Malignancy_Other organs
B584.00 Secondary malignant neoplasm of other part of nervous system Secondary Malignancy_Other organs 54120.0 Possible diagnosis of Secondary Malignancy_Other organs
B586.00 Secondary malignant neoplasm of ovary Secondary Malignancy_Other organs 44615.0 Diagnosis of Secondary Malignancy_Other organs
B58y.00 Secondary malignant neoplasm of other specified sites Secondary Malignancy_Other organs 18616.0 Possible diagnosis of Secondary Malignancy_Other organs
B58y000 Secondary malignant neoplasm of breast Secondary Malignancy_Other organs 16760.0 Diagnosis of Secondary Malignancy_Other organs
B58y100 Secondary malignant neoplasm of uterus Secondary Malignancy_Other organs 55090.0 Diagnosis of Secondary Malignancy_Other organs
B58y200 Secondary malignant neoplasm of cervix uteri Secondary Malignancy_Other organs 73616.0 Diagnosis of Secondary Malignancy_Other organs
B58y211 Secondary cancer of the cervix Secondary Malignancy_Other organs 97832.0 Diagnosis of Secondary Malignancy_Other organs
B58y300 Secondary malignant neoplasm of vagina Secondary Malignancy_Other organs 70736.0 Diagnosis of Secondary Malignancy_Other organs
B58y400 Secondary malignant neoplasm of vulva Secondary Malignancy_Other organs 60335.0 Diagnosis of Secondary Malignancy_Other organs
B58y411 Secondary cancer of the vulva Secondary Malignancy_Other organs 65490.0 Diagnosis of Secondary Malignancy_Other organs
B58y500 Secondary malignant neoplasm of prostate Secondary Malignancy_Other organs 21590.0 Diagnosis of Secondary Malignancy_Other organs
B58y600 Secondary malignant neoplasm of testis Secondary Malignancy_Other organs 34145.0 Diagnosis of Secondary Malignancy_Other organs
B58y700 Secondary malignant neoplasm of penis Secondary Malignancy_Other organs 49145.0 Diagnosis of Secondary Malignancy_Other organs
B58y800 Secondary malignant neoplasm of epididymis and vas deferens Secondary Malignancy_Other organs 104480.0 Diagnosis of Secondary Malignancy_Other organs
B58y900 Secondary malignant neoplasm of tongue Secondary Malignancy_Other organs 45824.0 Diagnosis of Secondary Malignancy_Other organs
B58yz00 Secondary malignant neoplasm of other specified site NOS Secondary Malignancy_Other organs 22524.0 Possible diagnosis of Secondary Malignancy_Other organs
B58z.00 Secondary malignant neoplasm of other specified site NOS Secondary Malignancy_Other organs 16500.0 Possible diagnosis of Secondary Malignancy_Other organs
B590.00 Disseminated malignancy NOS Secondary Malignancy_Other organs 13569.0 Diagnosis of Secondary Malignancy_Other organs
B590.11 Carcinomatosis Secondary Malignancy_Other organs 6170.0 Diagnosis of Secondary Malignancy_Other organs
B594.00 Secondary malignant neoplasm of unknown site Secondary Malignancy_Other organs 54679.0 Possible diagnosis of Secondary Malignancy_Other organs
BB03.00 [M]Neoplasm, metastatic Secondary Malignancy_Other organs 3197.0 Possible diagnosis of Secondary Malignancy_Other organs
BB03.11 [M]Secondary neoplasm Secondary Malignancy_Other organs 6985.0 Possible diagnosis of Secondary Malignancy_Other organs
BB13.00 [M]Carcinoma, metastatic, NOS Secondary Malignancy_Other organs 3152.0 Possible diagnosis of Secondary Malignancy_Other organs
BB13.11 [M]Secondary carcinoma Secondary Malignancy_Other organs 9366.0 Possible diagnosis of Secondary Malignancy_Other organs
BB2B.00 [M]Squamous cell carcinoma, metastatic NOS Secondary Malignancy_Other organs 24293.0 Possible diagnosis of Secondary Malignancy_Other organs
BB53.00 [M]Adenocarcinoma, metastatic, NOS Secondary Malignancy_Other organs 5455.0 Possible diagnosis of Secondary Malignancy_Other organs
BB85100 [M]Metastatic signet ring cell carcinoma Secondary Malignancy_Other organs 54874.0 Possible diagnosis of Secondary Malignancy_Other organs
BBy2.00 [M]No microscopic confirmation tumour, clinically metastatic Secondary Malignancy_Other organs 104699.0 Possible diagnosis of Secondary Malignancy_Other organs
ByuC300 [X]Secondary malignant neoplasm/oth+unspc respiratory organs Secondary Malignancy_Other organs 57481.0 Possible diagnosis of Secondary Malignancy_Other organs
ByuC400 [X]Secondary malignant neoplasm/oth+unspcfd digestive organs Secondary Malignancy_Other organs 88022.0 Possible diagnosis of Secondary Malignancy_Other organs
ByuC500 [X]2ndry malignant neoplasm/bladder+oth+unsp urinary organs Secondary Malignancy_Other organs 97091.0 Diagnosis of Secondary Malignancy_Other organs
ByuC600 [X]2ndry malignant neoplasm/oth+unspec parts/nervous system Secondary Malignancy_Other organs 68332.0 Possible diagnosis of Secondary Malignancy_Other organs
ByuC700 [X]Secondary malignant neoplasm of other specified sites Secondary Malignancy_Other organs 54253.0 Possible diagnosis of Secondary Malignancy_Other organs
Rows: 59
Code Description Disease ReadcodeDescr Readcode
100296.0 Diagnosis of Secondary Malignancy_Other organs Secondary Malignancy_Other organs Secondary malignant neoplasm of skin of face B582100
104480.0 Diagnosis of Secondary Malignancy_Other organs Secondary Malignancy_Other organs Secondary malignant neoplasm of epididymis and vas deferens B58y800
104699.0 Possible diagnosis of Secondary Malignancy_Other organs Secondary Malignancy_Other organs [M]No microscopic confirmation tumour, clinically metastatic BBy2.00
13569.0 Diagnosis of Secondary Malignancy_Other organs Secondary Malignancy_Other organs Disseminated malignancy NOS B590.00
16500.0 Possible diagnosis of Secondary Malignancy_Other organs Secondary Malignancy_Other organs Secondary malignant neoplasm of other specified site NOS B58z.00
16760.0 Diagnosis of Secondary Malignancy_Other organs Secondary Malignancy_Other organs Secondary malignant neoplasm of breast B58y000
18616.0 Possible diagnosis of Secondary Malignancy_Other organs Secondary Malignancy_Other organs Secondary malignant neoplasm of other specified sites B58y.00
1952.0 Diagnosis of Secondary Malignancy_Other organs Secondary Malignancy_Other organs Secondary malignant neoplasm of kidney B580.00
19945.0 Diagnosis of Secondary Malignancy_Other organs Secondary Malignancy_Other organs Secondary malignant neoplasm of skin B582.00
21590.0 Diagnosis of Secondary Malignancy_Other organs Secondary Malignancy_Other organs Secondary malignant neoplasm of prostate B58y500
22146.0 Diagnosis of Secondary Malignancy_Other organs Secondary Malignancy_Other organs Secondary malignant neoplasm of bladder B581100
22524.0 Possible diagnosis of Secondary Malignancy_Other organs Secondary Malignancy_Other organs Secondary malignant neoplasm of other specified site NOS B58yz00
24293.0 Possible diagnosis of Secondary Malignancy_Other organs Secondary Malignancy_Other organs [M]Squamous cell carcinoma, metastatic NOS BB2B.00
24301.0 Possible diagnosis of Secondary Malignancy_Other organs Secondary Malignancy_Other organs Secondary carcinoma of respiratory and/or digestive systems B57..12
27651.0 Possible diagnosis of Secondary Malignancy_Other organs Secondary Malignancy_Other organs Secondary carcinoma of other specified sites B58..11
3152.0 Possible diagnosis of Secondary Malignancy_Other organs Secondary Malignancy_Other organs [M]Carcinoma, metastatic, NOS BB13.00
3197.0 Possible diagnosis of Secondary Malignancy_Other organs Secondary Malignancy_Other organs [M]Neoplasm, metastatic BB03.00
34145.0 Diagnosis of Secondary Malignancy_Other organs Secondary Malignancy_Other organs Secondary malignant neoplasm of testis B58y600
35053.0 Possible diagnosis of Secondary Malignancy_Other organs Secondary Malignancy_Other organs Secondary malig neop of respiratory and digestive systems B57..00
35999.0 Diagnosis of Secondary Malignancy_Other organs Secondary Malignancy_Other organs Secondary malignant neoplasm of skin of neck B582200
41144.0 Diagnosis of Secondary Malignancy_Other organs Secondary Malignancy_Other organs Secondary malignant neoplasm of skin of trunk B582300
43930.0 Diagnosis of Secondary Malignancy_Other organs Secondary Malignancy_Other organs Secondary malignant neoplasm of skin of head B582000
44615.0 Diagnosis of Secondary Malignancy_Other organs Secondary Malignancy_Other organs Secondary malignant neoplasm of ovary B586.00
45824.0 Diagnosis of Secondary Malignancy_Other organs Secondary Malignancy_Other organs Secondary malignant neoplasm of tongue B58y900
48828.0 Diagnosis of Secondary Malignancy_Other organs Secondary Malignancy_Other organs Secondary malignant neoplasm of skin of hip and leg B582500
48991.0 Possible diagnosis of Secondary Malignancy_Other organs Secondary Malignancy_Other organs X-ray metastasis control 5136.00
49145.0 Diagnosis of Secondary Malignancy_Other organs Secondary Malignancy_Other organs Secondary malignant neoplasm of penis B58y700
51551.0 Diagnosis of Secondary Malignancy_Other organs Secondary Malignancy_Other organs Secondary malignant neoplasm of mediastinum B571.00
53528.0 Diagnosis of Secondary Malignancy_Other organs Secondary Malignancy_Other organs Secondary malignant neoplasm of urethra B581200
54120.0 Possible diagnosis of Secondary Malignancy_Other organs Secondary Malignancy_Other organs Secondary malignant neoplasm of other part of nervous system B584.00
54253.0 Possible diagnosis of Secondary Malignancy_Other organs Secondary Malignancy_Other organs [X]Secondary malignant neoplasm of other specified sites ByuC700
5455.0 Possible diagnosis of Secondary Malignancy_Other organs Secondary Malignancy_Other organs [M]Adenocarcinoma, metastatic, NOS BB53.00
54679.0 Possible diagnosis of Secondary Malignancy_Other organs Secondary Malignancy_Other organs Secondary malignant neoplasm of unknown site B594.00
54874.0 Possible diagnosis of Secondary Malignancy_Other organs Secondary Malignancy_Other organs [M]Metastatic signet ring cell carcinoma BB85100
55090.0 Diagnosis of Secondary Malignancy_Other organs Secondary Malignancy_Other organs Secondary malignant neoplasm of uterus B58y100
55096.0 Diagnosis of Secondary Malignancy_Other organs Secondary Malignancy_Other organs Secondary malignant neoplasm of skin NOS B582z00
56345.0 Possible diagnosis of Secondary Malignancy_Other organs Secondary Malignancy_Other organs Secondary malignant neoplasm of other digestive organ B57y.00
57481.0 Possible diagnosis of Secondary Malignancy_Other organs Secondary Malignancy_Other organs [X]Secondary malignant neoplasm/oth+unspc respiratory organs ByuC300
5842.0 Possible diagnosis of Secondary Malignancy_Other organs Secondary Malignancy_Other organs Secondary malignant neoplasm of other specified sites B58..00
60134.0 Diagnosis of Secondary Malignancy_Other organs Secondary Malignancy_Other organs Secondary malignant neoplasm of ureter B581000
60335.0 Diagnosis of Secondary Malignancy_Other organs Secondary Malignancy_Other organs Secondary malignant neoplasm of vulva B58y400
6170.0 Diagnosis of Secondary Malignancy_Other organs Secondary Malignancy_Other organs Carcinomatosis B590.11
62584.0 Possible diagnosis of Secondary Malignancy_Other organs Secondary Malignancy_Other organs Secondary malignant neoplasm of other respiratory organs B573.00
62828.0 Diagnosis of Secondary Malignancy_Other organs Secondary Malignancy_Other organs Secondary malignant neoplasm of other urinary organ NOS B581z00
63896.0 Diagnosis of Secondary Malignancy_Other organs Secondary Malignancy_Other organs Secondary malignant neoplasm of skin of shoulder and arm B582400
6471.0 Possible diagnosis of Secondary Malignancy_Other organs Secondary Malignancy_Other organs Metastases of respiratory and/or digestive systems B57..11
65490.0 Diagnosis of Secondary Malignancy_Other organs Secondary Malignancy_Other organs Secondary cancer of the vulva B58y411
66083.0 Possible diagnosis of Secondary Malignancy_Other organs Secondary Malignancy_Other organs Secondary malig neop of respiratory or digestive system NOS B57z.00
68332.0 Possible diagnosis of Secondary Malignancy_Other organs Secondary Malignancy_Other organs [X]2ndry malignant neoplasm/oth+unspec parts/nervous system ByuC600
6985.0 Possible diagnosis of Secondary Malignancy_Other organs Secondary Malignancy_Other organs [M]Secondary neoplasm BB03.11
70736.0 Diagnosis of Secondary Malignancy_Other organs Secondary Malignancy_Other organs Secondary malignant neoplasm of vagina B58y300
73213.0 Diagnosis of Secondary Malignancy_Other organs Secondary Malignancy_Other organs Secondary malignant neoplasm of other urinary organs B581.00
73616.0 Diagnosis of Secondary Malignancy_Other organs Secondary Malignancy_Other organs Secondary malignant neoplasm of cervix uteri B58y200
8600.0 Possible diagnosis of Secondary Malignancy_Other organs Secondary Malignancy_Other organs Pain from metastases 1D18.00
88022.0 Possible diagnosis of Secondary Malignancy_Other organs Secondary Malignancy_Other organs [X]Secondary malignant neoplasm/oth+unspcfd digestive organs ByuC400
9366.0 Possible diagnosis of Secondary Malignancy_Other organs Secondary Malignancy_Other organs [M]Secondary carcinoma BB13.11
9505.0 Diagnosis of Secondary Malignancy_Other organs Secondary Malignancy_Other organs Secondary malignant neoplasm of skin of breast B582600
97091.0 Diagnosis of Secondary Malignancy_Other organs Secondary Malignancy_Other organs [X]2ndry malignant neoplasm/bladder+oth+unsp urinary organs ByuC500
97832.0 Diagnosis of Secondary Malignancy_Other organs Secondary Malignancy_Other organs Secondary cancer of the cervix B58y211
Rows: 9
Code Description Disease Category
C78.1 Secondary malignant neoplasm of mediastinum Secondary Malignancy_Other organs Diagnosis of Secondary Malignancy_Other organs
C78.3 Secondary malignant neoplasm of other and unspecified respiratory organs Secondary Malignancy_Other organs Possible diagnosis of Secondary Malignancy_Other organs
C78.8 Secondary malignant neoplasm of other and unspecified digestive organs Secondary Malignancy_Other organs Possible diagnosis of Secondary Malignancy_Other organs
C79.0 Secondary malignant neoplasm of kidney and renal pelvis Secondary Malignancy_Other organs Diagnosis of Secondary Malignancy_Other organs
C79.1 Secondary malignant neoplasm of bladder and other and unspecified urinary organs Secondary Malignancy_Other organs Diagnosis of Secondary Malignancy_Other organs
C79.2 Secondary malignant neoplasm of skin Secondary Malignancy_Other organs Diagnosis of Secondary Malignancy_Other organs
C79.6 Secondary malignant neoplasm of ovary Secondary Malignancy_Other organs Diagnosis of Secondary Malignancy_Other organs
C79.8 Secondary malignant neoplasm of other specified sites Secondary Malignancy_Other organs Possible diagnosis of Secondary Malignancy_Other organs
C79.9 Secondary malignant neoplasm, unspecified site Secondary Malignancy_Other organs Possible diagnosis of Secondary Malignancy_Other organs

API

To Export Phenotype Details:

Format API
XML site_root/api/v1/public/phenotypes/PH297/version/594/detail/?format=xml
JSON site_root/api/v1/public/phenotypes/PH297/version/594/detail/?format=json
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get details of phenotype

details = get_phenotype_detail_by_version('PH297', '594', api_client=client)

To Export Phenotype Code List:

Format API
XML site_root/api/v1/public/phenotypes/PH297/version/594/export/codes/?format=xml
JSON site_root/api/v1/public/phenotypes/PH297/version/594/export/codes/?format=json
CSV site_root/phenotypes/PH297/version/594/export/codes/
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get codelists of phenotype

codelists = get_phenotype_code_list('PH297', '594', api_client=client)

Version History

Version
ID		 Name Owner Publish date
594 Secondary Malignancy_Other organs ieuan.scanlon 2021-10-06 currently shown

Export - export all codes into a csv file/JSON/XML for the current phenotype version.

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