Phenotype Library | phenotype: Secondary Malignancy

Secondary Malignancy_retroperitoneum and peritoneum

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

PH298

Version ID

596

Type

Disease or Syndrome

Data Sources

CPRD GOLD , HES Admitted Patient Care data for CPRD GOLD

Valid event data range

01/01/1999 - 01/07/2016

Sex

♀ Female ♂ Male

Agreement Date

2019-05-20

Coding system

Read codes v2 ICD10 codes Med codes

Collections

CALIBER Phenotype Library

Definition

At the specified date, a patient is defined as having had Secondary Malignancy retroperitoneum and peritoneum IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Primary care

Secondary Malignancy_retroperitoneum and peritoneum diagnosis or history of diagnosis during a consultation

OR Secondary care

ALL diagnoses of Secondary Malignancy_retroperitoneum and peritoneum or history of diagnosis during a hospitalization

Implementation

PhenoFlow Implementation:

https://kclhi.org/phenoflow/phenotype/download/868

Publications

Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

CSV

JSON

XML

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C1540/4219 Secondary Malignancy_retroperitoneum and peritoneum - Primary care - Read codes v2

Rows: 5

Code	Description	Disease	Medcode	Category
B576.00	Secondary malig neop of retroperitoneum and peritoneum	Secondary Malignancy_retroperitoneum and peritoneum	67396.0	Diagnosis of Secondary Malignancy_retroperitoneum and peritoneum
B576000	Secondary malignant neoplasm of retroperitoneum	Secondary Malignancy_retroperitoneum and peritoneum	35364.0	Diagnosis of Secondary Malignancy_retroperitoneum and peritoneum
B576100	Secondary malignant neoplasm of peritoneum	Secondary Malignancy_retroperitoneum and peritoneum	27391.0	Diagnosis of Secondary Malignancy_retroperitoneum and peritoneum
B576200	Malignant ascites	Secondary Malignancy_retroperitoneum and peritoneum	8154.0	Diagnosis of Secondary Malignancy_retroperitoneum and peritoneum
B576z00	Secondary malig neop of retroperitoneum or peritoneum NOS	Secondary Malignancy_retroperitoneum and peritoneum	97672.0	Diagnosis of Secondary Malignancy_retroperitoneum and peritoneum

C1541/4221 Secondary Malignancy_retroperitoneum and peritoneum - Primary care - Med codes

Rows: 5

Code	Description	Disease	ReadcodeDescr	Readcode
27391.0	Diagnosis of Secondary Malignancy_retroperitoneum and peritoneum	Secondary Malignancy_retroperitoneum and peritoneum	Secondary malignant neoplasm of peritoneum	B576100
35364.0	Diagnosis of Secondary Malignancy_retroperitoneum and peritoneum	Secondary Malignancy_retroperitoneum and peritoneum	Secondary malignant neoplasm of retroperitoneum	B576000
67396.0	Diagnosis of Secondary Malignancy_retroperitoneum and peritoneum	Secondary Malignancy_retroperitoneum and peritoneum	Secondary malig neop of retroperitoneum and peritoneum	B576.00
8154.0	Diagnosis of Secondary Malignancy_retroperitoneum and peritoneum	Secondary Malignancy_retroperitoneum and peritoneum	Malignant ascites	B576200
97672.0	Diagnosis of Secondary Malignancy_retroperitoneum and peritoneum	Secondary Malignancy_retroperitoneum and peritoneum	Secondary malig neop of retroperitoneum or peritoneum NOS	B576z00

C1542/4223 Secondary Malignancy_retroperitoneum and peritoneum - Secondary care - Diagnoses - ICD10 codes

Rows: 1

Code	Description	Disease	Category
C78.6	Secondary malignant neoplasm of retroperitoneum and peritoneum	Secondary Malignancy_retroperitoneum and peritoneum	Diagnosis of Secondary Malignancy_retroperitoneum and peritoneum

API

To Export Phenotype Details:

Format	API
XML	site_root/api/v1/public/phenotypes/PH298/version/596/detail/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH298/version/596/detail/?format=json
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get details of phenotype details = get_phenotype_detail_by_version('PH298', '596', api_client=client)`

To Export Phenotype Code List:

Format	API
XML	site_root/api/v1/public/phenotypes/PH298/version/596/export/codes/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH298/version/596/export/codes/?format=json
CSV	site_root/phenotypes/PH298/version/596/export/codes/
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get codelists of phenotype codelists = get_phenotype_code_list('PH298', '596', api_client=client)`

Version History

Version ID	Name	Owner	Publish date
596	Secondary Malignancy_retroperitoneum and peritoneum	ieuan.scanlon	2021-10-06	currently shown