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Secondary Malignancy_retroperitoneum and peritoneum

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

Type
Disease or Syndrome
ID
PH298
Version ID
596
Valid event data range
01/01/1999 - 01/07/2016
Sex
Female, Male
Agreement Date
2019-05-20
Coding system
Read codes v2 ICD10 codes Med codes
Tags /Collections
CALIBER Phenotype Library

Definition

At the specified date, a patient is defined as having had Secondary Malignancy retroperitoneum and peritoneum IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Primary care

  1. Secondary Malignancy_retroperitoneum and peritoneum diagnosis or history of diagnosis during a consultation

OR Secondary care

  1. ALL diagnoses of Secondary Malignancy_retroperitoneum and peritoneum or history of diagnosis during a hospitalization

Implementation


Publications

  • Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

Rows: 5
Code Description Disease Medcode Category
B576.00 Secondary malig neop of retroperitoneum and peritoneum Secondary Malignancy_retroperitoneum and peritoneum 67396.0 Diagnosis of Secondary Malignancy_retroperitoneum and peritoneum
B576000 Secondary malignant neoplasm of retroperitoneum Secondary Malignancy_retroperitoneum and peritoneum 35364.0 Diagnosis of Secondary Malignancy_retroperitoneum and peritoneum
B576100 Secondary malignant neoplasm of peritoneum Secondary Malignancy_retroperitoneum and peritoneum 27391.0 Diagnosis of Secondary Malignancy_retroperitoneum and peritoneum
B576200 Malignant ascites Secondary Malignancy_retroperitoneum and peritoneum 8154.0 Diagnosis of Secondary Malignancy_retroperitoneum and peritoneum
B576z00 Secondary malig neop of retroperitoneum or peritoneum NOS Secondary Malignancy_retroperitoneum and peritoneum 97672.0 Diagnosis of Secondary Malignancy_retroperitoneum and peritoneum
Rows: 5
Code Description Disease ReadcodeDescr Readcode
27391.0 Diagnosis of Secondary Malignancy_retroperitoneum and peritoneum Secondary Malignancy_retroperitoneum and peritoneum Secondary malignant neoplasm of peritoneum B576100
35364.0 Diagnosis of Secondary Malignancy_retroperitoneum and peritoneum Secondary Malignancy_retroperitoneum and peritoneum Secondary malignant neoplasm of retroperitoneum B576000
67396.0 Diagnosis of Secondary Malignancy_retroperitoneum and peritoneum Secondary Malignancy_retroperitoneum and peritoneum Secondary malig neop of retroperitoneum and peritoneum B576.00
8154.0 Diagnosis of Secondary Malignancy_retroperitoneum and peritoneum Secondary Malignancy_retroperitoneum and peritoneum Malignant ascites B576200
97672.0 Diagnosis of Secondary Malignancy_retroperitoneum and peritoneum Secondary Malignancy_retroperitoneum and peritoneum Secondary malig neop of retroperitoneum or peritoneum NOS B576z00
Rows: 1
Code Description Disease Category
C78.6 Secondary malignant neoplasm of retroperitoneum and peritoneum Secondary Malignancy_retroperitoneum and peritoneum Diagnosis of Secondary Malignancy_retroperitoneum and peritoneum

API

To Export Phenotype Details:

Format API
XML site_root/api/v1/public/phenotypes/PH298/version/596/detail/?format=xml
JSON site_root/api/v1/public/phenotypes/PH298/version/596/detail/?format=json
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get details of phenotype

details = get_phenotype_detail_by_version('PH298', '596', api_client=client)

To Export Phenotype Code List:

Format API
XML site_root/api/v1/public/phenotypes/PH298/version/596/export/codes/?format=xml
JSON site_root/api/v1/public/phenotypes/PH298/version/596/export/codes/?format=json
CSV site_root/phenotypes/PH298/version/596/export/codes/
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get codelists of phenotype

codelists = get_phenotype_code_list('PH298', '596', api_client=client)

Version History

Version
ID
Name Owner Publish date
596 Secondary Malignancy_retroperitoneum and peritoneum ieuan.scanlon 2021-10-06 currently shown

Export - export all codes into a csv file/JSON/XML for the current phenotype version.

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