Phenotypes > Secondary Malignancy_Pleura

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Secondary Malignancy_Pleura

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

ID
PH299
Version ID
598
Type
Disease or Syndrome
Data Sources
CPRD GOLD , HES Admitted Patient Care data for CPRD GOLD
Valid event data range
01/01/1999 - 01/07/2016
Sex
♀  Female ♂  Male
Agreement Date
2019-05-20
Coding system
Read codes v2 ICD10 codes Med codes
Collections
CALIBER Phenotype Library
Tags
No tags

Definition

At the specified date, a patient is defined as having had Secondary Malignancy Pleura IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Primary care

  1. Secondary Malignancy Pleura diagnosis or history of diagnosis during a consultation

OR Secondary care

  1. ALL diagnoses of Secondary Malignancy Pleura or history of diagnosis during a hospitalization

Implementation


https://kclhi.org/phenoflow/phenotype/download/873

Publications

  • Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

Expand All  /  Collapse All
Rows: 1
Code Description Disease Medcode Category
B572.00 Secondary malignant neoplasm of pleura Secondary Malignancy_Pleura 16213.0 Diagnosis of Secondary Malignancy_Pleura
Rows: 1
Code Description Disease ReadcodeDescr Readcode
16213.0 Diagnosis of Secondary Malignancy_Pleura Secondary Malignancy_Pleura Secondary malignant neoplasm of pleura B572.00
Rows: 1
Code Description Disease Category
C78.2 Secondary malignant neoplasm of pleura Secondary Malignancy_Pleura Diagnosis of Secondary Malignancy_Pleura

API

To Export Phenotype Details:

Format API
XML site_root/api/v1/public/phenotypes/PH299/version/598/detail/?format=xml
JSON site_root/api/v1/public/phenotypes/PH299/version/598/detail/?format=json
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get details of phenotype

details = get_phenotype_detail_by_version('PH299', '598', api_client=client)

To Export Phenotype Code List:

Format API
XML site_root/api/v1/public/phenotypes/PH299/version/598/export/codes/?format=xml
JSON site_root/api/v1/public/phenotypes/PH299/version/598/export/codes/?format=json
CSV site_root/phenotypes/PH299/version/598/export/codes/
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get codelists of phenotype

codelists = get_phenotype_code_list('PH299', '598', api_client=client)

Version History

Version
ID		 Name Owner Publish date
598 Secondary Malignancy_Pleura ieuan.scanlon 2021-10-06 currently shown

Export - export all codes into a csv file/JSON/XML for the current phenotype version.

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