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Septicaemia

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

Type
Disease or Syndrome
ID
PH301
Version ID
602
Valid event data range
01/01/1999 - 01/07/2016
Sex
Female, Male
Agreement Date
2019-05-20
Coding system
ICD10 codes
Tags /Collections
CALIBER Phenotype Library

Definition

At the specified date, a patient is defined as having had 'Septicaemia' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Secondary care

  1. ALL diagnoses of 'Septicaemia' or history of diagnosis during a hospitalization

Implementation


Publications

  • Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

Rows: 14
Code Description Disease Category
A02.1 Salmonella sepsis Septicaemia Diagnosis of Septicaemia
A20.7 Septicaemic plague Septicaemia Diagnosis of Septicaemia
A22.7 Anthrax sepsis Septicaemia Diagnosis of Septicaemia
A26.7 Erysipelothrix sepsis Septicaemia Diagnosis of Septicaemia
A32.7 Listerial sepsis Septicaemia Diagnosis of Septicaemia
A39.1 Waterhouse-Friderichsen syndrome Septicaemia Diagnosis of Septicaemia
A39.2 Acute meningococcaemia Septicaemia Diagnosis of Septicaemia
A39.3 Chronic meningococcaemia Septicaemia Diagnosis of Septicaemia
A39.4 Meningococcaemia, unspecified Septicaemia Diagnosis of Septicaemia
A40 Streptococcal sepsis Septicaemia Diagnosis of Septicaemia
A41 Other sepsis Septicaemia Diagnosis of Septicaemia
A42.7 Actinomycotic sepsis Septicaemia Diagnosis of Septicaemia
B37.7 Candidal sepsis Septicaemia Diagnosis of Septicaemia
P36 Bacterial sepsis of newborn Septicaemia Diagnosis of Septicaemia

API

To Export Phenotype Details:

Format API
XML site_root/api/v1/public/phenotypes/PH301/version/602/detail/?format=xml
JSON site_root/api/v1/public/phenotypes/PH301/version/602/detail/?format=json
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get details of phenotype

details = get_phenotype_detail_by_version('PH301', '602', api_client=client)

To Export Phenotype Code List:

Format API
XML site_root/api/v1/public/phenotypes/PH301/version/602/export/codes/?format=xml
JSON site_root/api/v1/public/phenotypes/PH301/version/602/export/codes/?format=json
CSV site_root/phenotypes/PH301/version/602/export/codes/
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get codelists of phenotype

codelists = get_phenotype_code_list('PH301', '602', api_client=client)

Version History

Version
ID
Name Owner Publish date
602 Septicaemia ieuan.scanlon 2021-10-06 currently shown

Export - export all codes into a csv file/JSON/XML for the current phenotype version.

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