Phenotype Library | phenotype: Sick sinus syndrome

Sick sinus syndrome

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

PH303

Version ID

606

Type

Disease or Syndrome

Data Sources

CPRD GOLD , HES Admitted Patient Care data for CPRD GOLD

Valid event data range

01/01/1999 - 01/07/2016

Sex

♀ Female ♂ Male

Agreement Date

2019-05-20

Coding system

Read codes v2 ICD10 codes Med codes

Collections

CALIBER Phenotype Library

Definition

At the specified date, a patient is defined as having had 'Sick sinus syndrome' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Primary care

'Sick sinus syndrome' diagnosis or history of diagnosis during a consultation

OR Secondary care (ICD10)

ALL diagnoses of 'Sick sinus syndrome' or history of diagnosis during a hospitalization

Implementation

PhenoFlow Implementation:

https://kclhi.org/phenoflow/phenotype/download/883

Publications

Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

CSV

JSON

XML

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C1553/4245 Sick sinus syndrome - Primary care - Read codes v2

Rows: 2

Code	Description	Disease	Medcode	Category
G57y300	Sick sinus syndrome	Sick sinus syndrome	5576.0	Diagnosis of Sick sinus syndrome
G57y400	Sinoatrial node dysfunction NOS	Sick sinus syndrome	7410.0	Diagnosis of Sick sinus syndrome

C1554/4247 Sick sinus syndrome - Primary care - Med codes

Rows: 2

Code	Description	Disease	ReadcodeDescr	Readcode
5576.0	Diagnosis of Sick sinus syndrome	Sick sinus syndrome	Sick sinus syndrome	G57y300
7410.0	Diagnosis of Sick sinus syndrome	Sick sinus syndrome	Sinoatrial node dysfunction NOS	G57y400

C1555/4249 Sick sinus syndrome - Secondary care - Diagnoses - ICD10 codes

Rows: 1

Code	Description	Disease	Category
I49.5	Sick sinus syndrome	Sick sinus syndrome	Diagnosis of Sick sinus syndrome

API

To Export Phenotype Details:

Format	API
XML	site_root/api/v1/public/phenotypes/PH303/version/606/detail/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH303/version/606/detail/?format=json
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get details of phenotype details = get_phenotype_detail_by_version('PH303', '606', api_client=client)`

To Export Phenotype Code List:

Format	API
XML	site_root/api/v1/public/phenotypes/PH303/version/606/export/codes/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH303/version/606/export/codes/?format=json
CSV	site_root/phenotypes/PH303/version/606/export/codes/
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get codelists of phenotype codelists = get_phenotype_code_list('PH303', '606', api_client=client)`

Version History

Version ID	Name	Owner	Publish date
606	Sick sinus syndrome	ieuan.scanlon	2021-10-06	currently shown