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Sickle-cell anaemia

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

Type
Disease or Syndrome
ID
PH304
Version ID
608
Valid event data range
01/01/1999 - 01/07/2016
Sex
Female, Male
Agreement Date
2019-05-20
Coding system
Read codes v2 ICD10 codes Med codes
Tags /Collections
CALIBER Phenotype Library

Definition

At the specified date, a patient is defined as having had Sickle-cell anaemia IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Primary care

  1. Sickle-cell anaemia diagnosis or history of diagnosis during a consultation

OR Secondary care (ICD10)

  1. ALL diagnoses of Sickle-cell anaemia or history of diagnosis during a hospitalization

Implementation


Publications

  • Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

Rows: 13
Code Description Disease Medcode Category
1458.00 History of sickle cell anaemia Sickle-cell anaemia 100001.0 History of Sickle-cell anaemia
D104211 Sickle-cell thalassaemia Sickle-cell anaemia 31075.0 Diagnosis of Sickle-cell anaemia
D106.00 Sickle-cell anaemia Sickle-cell anaemia 23519.0 Diagnosis of Sickle-cell anaemia
D106000 Sickle-cell anaemia of unspecified type Sickle-cell anaemia 69964.0 Diagnosis of Sickle-cell anaemia
D106100 Sickle-cell anaemia with no crisis Sickle-cell anaemia 32937.0 Diagnosis of Sickle-cell anaemia
D106200 Sickle-cell anaemia with crisis Sickle-cell anaemia 31370.0 Diagnosis of Sickle-cell anaemia
D106300 Sickle-cell anaemia with haemoglobin C disease Sickle-cell anaemia 31306.0 Diagnosis of Sickle-cell anaemia
D106400 Sickle-cell anaemia with haemoglobin D disease Sickle-cell anaemia 8119.0 Diagnosis of Sickle-cell anaemia
D106500 Sickle-cell anaemia with haemoglobin E disease Sickle-cell anaemia 93872.0 Diagnosis of Sickle-cell anaemia
D106z00 Sickle-cell anaemia NOS Sickle-cell anaemia 57397.0 Diagnosis of Sickle-cell anaemia
Dyu1200 [X]Other sickle-cell disorders Sickle-cell anaemia 48295.0 Diagnosis of Sickle-cell anaemia
F422100 Proliferative retinopathy due to sickle cell disease Sickle-cell anaemia 11874.0 History of Sickle-cell anaemia
K0G..00 Sickle cell nephropathy Sickle-cell anaemia 107027.0 History of Sickle-cell anaemia
Rows: 13
Code Description Disease ReadcodeDescr Readcode
100001.0 History of Sickle-cell anaemia Sickle-cell anaemia History of sickle cell anaemia 1458.00
107027.0 History of Sickle-cell anaemia Sickle-cell anaemia Sickle cell nephropathy K0G..00
11874.0 History of Sickle-cell anaemia Sickle-cell anaemia Proliferative retinopathy due to sickle cell disease F422100
23519.0 Diagnosis of Sickle-cell anaemia Sickle-cell anaemia Sickle-cell anaemia D106.00
31075.0 Diagnosis of Sickle-cell anaemia Sickle-cell anaemia Sickle-cell thalassaemia D104211
31306.0 Diagnosis of Sickle-cell anaemia Sickle-cell anaemia Sickle-cell anaemia with haemoglobin C disease D106300
31370.0 Diagnosis of Sickle-cell anaemia Sickle-cell anaemia Sickle-cell anaemia with crisis D106200
32937.0 Diagnosis of Sickle-cell anaemia Sickle-cell anaemia Sickle-cell anaemia with no crisis D106100
48295.0 Diagnosis of Sickle-cell anaemia Sickle-cell anaemia [X]Other sickle-cell disorders Dyu1200
57397.0 Diagnosis of Sickle-cell anaemia Sickle-cell anaemia Sickle-cell anaemia NOS D106z00
69964.0 Diagnosis of Sickle-cell anaemia Sickle-cell anaemia Sickle-cell anaemia of unspecified type D106000
8119.0 Diagnosis of Sickle-cell anaemia Sickle-cell anaemia Sickle-cell anaemia with haemoglobin D disease D106400
93872.0 Diagnosis of Sickle-cell anaemia Sickle-cell anaemia Sickle-cell anaemia with haemoglobin E disease D106500
Rows: 4
Code Description Disease Category
D57.0 Sickle-cell anaemia with crisis Sickle-cell anaemia Diagnosis of Sickle-cell anaemia
D57.1 Sickle-cell anaemia without crisis Sickle-cell anaemia Diagnosis of Sickle-cell anaemia
D57.2 Double heterozygous sickling disorders Sickle-cell anaemia Diagnosis of Sickle-cell anaemia
D57.8 Other sickle-cell disorders Sickle-cell anaemia Diagnosis of Sickle-cell anaemia

API

To Export Phenotype Details:

Format API
XML site_root/api/v1/public/phenotypes/PH304/version/608/detail/?format=xml
JSON site_root/api/v1/public/phenotypes/PH304/version/608/detail/?format=json
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get details of phenotype

details = get_phenotype_detail_by_version('PH304', '608', api_client=client)

To Export Phenotype Code List:

Format API
XML site_root/api/v1/public/phenotypes/PH304/version/608/export/codes/?format=xml
JSON site_root/api/v1/public/phenotypes/PH304/version/608/export/codes/?format=json
CSV site_root/phenotypes/PH304/version/608/export/codes/
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get codelists of phenotype

codelists = get_phenotype_code_list('PH304', '608', api_client=client)

Version History

Version
ID
Name Owner Publish date
608 Sickle-cell anaemia ieuan.scanlon 2021-10-06 currently shown

Export - export all codes into a csv file/JSON/XML for the current phenotype version.

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