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Sickle-cell trait

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

Type
Disease or Syndrome
ID
PH305
Version ID
610
Valid event data range
01/01/1999 - 01/07/2016
Sex
Female, Male
Agreement Date
2019-05-20
Coding system
Read codes v2 ICD10 codes Med codes
Tags /Collections
CALIBER Phenotype Library

Definition

At the specified date, a patient is defined as having had Sickle-cell trait IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Primary care

  1. Sickle-cell trait diagnosis or history of diagnosis during a consultation

OR Secondary care (ICD10)

  1. ALL diagnoses of Sickle-cell trait or history of diagnosis during a hospitalization

Implementation


Publications

  • Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

Rows: 2
Code Description Disease Medcode Category
677C600 Sickle cell gene carrier Sickle-cell trait 106623.0 Diagnosis of Sickle-cell trait
D105.00 Sickle-cell trait Sickle-cell trait 3616.0 Diagnosis of Sickle-cell trait
Rows: 2
Code Description Disease ReadcodeDescr Readcode
106623.0 Diagnosis of Sickle-cell trait Sickle-cell trait Sickle cell gene carrier 677C600
3616.0 Diagnosis of Sickle-cell trait Sickle-cell trait Sickle-cell trait D105.00
Rows: 1
Code Description Disease Category
D57.3 Sickle-cell trait Sickle-cell trait Diagnosis of Sickle-cell trait

API

To Export Phenotype Details:

Format API
XML site_root/api/v1/public/phenotypes/PH305/version/610/detail/?format=xml
JSON site_root/api/v1/public/phenotypes/PH305/version/610/detail/?format=json
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get details of phenotype

details = get_phenotype_detail_by_version('PH305', '610', api_client=client)

To Export Phenotype Code List:

Format API
XML site_root/api/v1/public/phenotypes/PH305/version/610/export/codes/?format=xml
JSON site_root/api/v1/public/phenotypes/PH305/version/610/export/codes/?format=json
CSV site_root/phenotypes/PH305/version/610/export/codes/
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get codelists of phenotype

codelists = get_phenotype_code_list('PH305', '610', api_client=client)

Version History

Version
ID
Name Owner Publish date
610 Sickle-cell trait ieuan.scanlon 2021-10-06 currently shown

Export - export all codes into a csv file/JSON/XML for the current phenotype version.

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