Phenotype Library | phenotype: Sjogren's disease

Sjogren's disease

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

PH307

Version ID

614

Type

Disease or Syndrome

Data Sources

CPRD GOLD , HES Admitted Patient Care data for CPRD GOLD

Valid event data range

01/01/1999 - 01/07/2016

Sex

♀ Female ♂ Male

Agreement Date

2019-05-20

Coding system

Read codes v2 ICD10 codes Med codes

Collections

CALIBER Phenotype Library

Definition

At the specified date, a patient is defined as having had Sjogren's disease IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Primary care

Sjogren's disease diagnosis or history of diagnosis during a consultation

OR Secondary care (ICD10)

ALL diagnoses of Sjogren's disease or history of diagnosis during a hospitalization

Implementation

PhenoFlow Implementation:

https://kclhi.org/phenoflow/phenotype/download/897

Publications

Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

CSV

JSON

XML

Expand All / Collapse All

C1565/4269 Sjogren's disease - Primary care - Read codes v2

Rows: 3

Code	Description	Disease	Medcode	Category
F396700	Myopathy due to Sjogren's disease	Sjogren's disease	21022.0	Diagnosis of Sjogren's disease
H57y300	Lung disease with Sjogren's disease	Sjogren's disease	47364.0	Diagnosis of Sjogren's disease
N002.00	Sicca (Sjogren's) syndrome	Sjogren's disease	2360.0	Diagnosis of Sjogren's disease

C1566/4271 Sjogren's disease - Primary care - Med codes

Rows: 3

Code	Description	Disease	ReadcodeDescr	Readcode
21022.0	Diagnosis of Sjogren's disease	Sjogren's disease	Myopathy due to Sjogren's disease	F396700
2360.0	Diagnosis of Sjogren's disease	Sjogren's disease	Sicca (Sjogren's) syndrome	N002.00
47364.0	Diagnosis of Sjogren's disease	Sjogren's disease	Lung disease with Sjogren's disease	H57y300

C1567/4273 Sjogren's disease - Secondary care - Diagnoses - ICD10 codes

Rows: 1

Code	Description	Disease	Category
M35.0	Sicca syndrome [Sjgren]	Sjogren's disease	Diagnosis of Sjogren's disease

API

To Export Phenotype Details:

Format	API
XML	site_root/api/v1/public/phenotypes/PH307/version/614/detail/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH307/version/614/detail/?format=json
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get details of phenotype details = get_phenotype_detail_by_version('PH307', '614', api_client=client)`

To Export Phenotype Code List:

Format	API
XML	site_root/api/v1/public/phenotypes/PH307/version/614/export/codes/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH307/version/614/export/codes/?format=json
CSV	site_root/phenotypes/PH307/version/614/export/codes/
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get codelists of phenotype codelists = get_phenotype_code_list('PH307', '614', api_client=client)`

Version History

Version ID	Name	Owner	Publish date
614	Sjogren's disease	ieuan.scanlon	2021-10-06	currently shown