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Sjogren's disease

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

Type
Disease or Syndrome
ID
PH307
Version ID
614
Valid event data range
01/01/1999 - 01/07/2016
Sex
Female, Male
Agreement Date
2019-05-20
Coding system
Read codes v2 ICD10 codes Med codes
Tags /Collections
CALIBER Phenotype Library

Definition

At the specified date, a patient is defined as having had Sjogren's disease IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Primary care

  1. Sjogren's disease diagnosis or history of diagnosis during a consultation

OR Secondary care (ICD10)

  1. ALL diagnoses of Sjogren's disease or history of diagnosis during a hospitalization

Implementation


Publications

  • Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

Rows: 3
Code Description Disease Medcode Category
F396700 Myopathy due to Sjogren's disease Sjogren's disease 21022.0 Diagnosis of Sjogren's disease
H57y300 Lung disease with Sjogren's disease Sjogren's disease 47364.0 Diagnosis of Sjogren's disease
N002.00 Sicca (Sjogren's) syndrome Sjogren's disease 2360.0 Diagnosis of Sjogren's disease
Rows: 3
Code Description Disease ReadcodeDescr Readcode
21022.0 Diagnosis of Sjogren's disease Sjogren's disease Myopathy due to Sjogren's disease F396700
2360.0 Diagnosis of Sjogren's disease Sjogren's disease Sicca (Sjogren's) syndrome N002.00
47364.0 Diagnosis of Sjogren's disease Sjogren's disease Lung disease with Sjogren's disease H57y300
Rows: 1
Code Description Disease Category
M35.0 Sicca syndrome [Sjgren] Sjogren's disease Diagnosis of Sjogren's disease

API

To Export Phenotype Details:

Format API
XML site_root/api/v1/public/phenotypes/PH307/version/614/detail/?format=xml
JSON site_root/api/v1/public/phenotypes/PH307/version/614/detail/?format=json
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get details of phenotype

details = get_phenotype_detail_by_version('PH307', '614', api_client=client)

To Export Phenotype Code List:

Format API
XML site_root/api/v1/public/phenotypes/PH307/version/614/export/codes/?format=xml
JSON site_root/api/v1/public/phenotypes/PH307/version/614/export/codes/?format=json
CSV site_root/phenotypes/PH307/version/614/export/codes/
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get codelists of phenotype

codelists = get_phenotype_code_list('PH307', '614', api_client=client)

Version History

Version
ID
Name Owner Publish date
614 Sjogren's disease ieuan.scanlon 2021-10-06 currently shown

Export - export all codes into a csv file/JSON/XML for the current phenotype version.

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