Phenotypes > Infection of skin and subcutaneous tissues

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Infection of skin and subcutaneous tissues

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

ID
PH308
Version ID
616
Type
Disease or Syndrome
Data Sources
HES Admitted Patient Care data for CPRD GOLD
Valid event data range
01/01/1999 - 01/07/2016
Sex
♀  Female ♂  Male
Agreement Date
2019-05-20
Coding system
ICD10 codes
Collections
CALIBER Phenotype Library
Tags
No tags

Definition

At the specified date, a patient is defined as having had Infection of skin and subcutaneous tissues IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Secondary care

  1. ALL diagnoses of Infection of skin and subcutaneous tissues or history of diagnosis during a hospitalization

Implementation


https://kclhi.org/phenoflow/phenotype/download/898

Publications

  • Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

Expand All  /  Collapse All
Rows: 43
Code Description Disease Category
A06.7 Cutaneous amoebiasis Infection of skin and subcutaneous tissues Diagnosis of Infection of skin and subcutaneous tissues
A18.4 Tuberculosis of skin and subcutaneous tissue Infection of skin and subcutaneous tissues Diagnosis of Infection of skin and subcutaneous tissues
A20.1 Cellulocutaneous plague Infection of skin and subcutaneous tissues Diagnosis of Infection of skin and subcutaneous tissues
A21.0 Ulceroglandular tularaemia Infection of skin and subcutaneous tissues Diagnosis of Infection of skin and subcutaneous tissues
A22.0 Cutaneous anthrax Infection of skin and subcutaneous tissues Diagnosis of Infection of skin and subcutaneous tissues
A26.0 Cutaneous erysipeloid Infection of skin and subcutaneous tissues Diagnosis of Infection of skin and subcutaneous tissues
A31.1 Cutaneous mycobacterial infection Infection of skin and subcutaneous tissues Diagnosis of Infection of skin and subcutaneous tissues
A32.0 Cutaneous listeriosis Infection of skin and subcutaneous tissues Diagnosis of Infection of skin and subcutaneous tissues
A36.3 Cutaneous diphtheria Infection of skin and subcutaneous tissues Diagnosis of Infection of skin and subcutaneous tissues
A43.1 Cutaneous nocardiosis Infection of skin and subcutaneous tissues Diagnosis of Infection of skin and subcutaneous tissues
A46 Erysipelas Infection of skin and subcutaneous tissues Diagnosis of Infection of skin and subcutaneous tissues
A51.3 Secondary syphilis of skin and mucous membranes Infection of skin and subcutaneous tissues Diagnosis of Infection of skin and subcutaneous tissues
B00.0 Eczema herpeticum Infection of skin and subcutaneous tissues Diagnosis of Infection of skin and subcutaneous tissues
B00.1 Herpesviral vesicular dermatitis Infection of skin and subcutaneous tissues Diagnosis of Infection of skin and subcutaneous tissues
B07 Viral warts Infection of skin and subcutaneous tissues Diagnosis of Infection of skin and subcutaneous tissues
B08 Other viral infections characterized by skin and mucous membrane lesions, not elsewhere classified Infection of skin and subcutaneous tissues Diagnosis of Infection of skin and subcutaneous tissues
B09 Unspecified viral infection characterized by skin and mucous membrane lesions Infection of skin and subcutaneous tissues Diagnosis of Infection of skin and subcutaneous tissues
B35 Dermatophytosis Infection of skin and subcutaneous tissues Diagnosis of Infection of skin and subcutaneous tissues
B36 Other superficial mycoses Infection of skin and subcutaneous tissues Diagnosis of Infection of skin and subcutaneous tissues
B37.2 Candidiasis of skin and nail Infection of skin and subcutaneous tissues Diagnosis of Infection of skin and subcutaneous tissues
B38.3 Cutaneous coccidioidomycosis Infection of skin and subcutaneous tissues Diagnosis of Infection of skin and subcutaneous tissues
B40.3 Cutaneous blastomycosis Infection of skin and subcutaneous tissues Diagnosis of Infection of skin and subcutaneous tissues
B42.1 Lymphocutaneous sporotrichosis Infection of skin and subcutaneous tissues Diagnosis of Infection of skin and subcutaneous tissues
B43.0 Cutaneous chromomycosis Infection of skin and subcutaneous tissues Diagnosis of Infection of skin and subcutaneous tissues
B43.2 Subcutaneous phaeomycotic abscess and cyst Infection of skin and subcutaneous tissues Diagnosis of Infection of skin and subcutaneous tissues
B45.2 Cutaneous cryptococcosis Infection of skin and subcutaneous tissues Diagnosis of Infection of skin and subcutaneous tissues
B46.3 Cutaneous mucormycosis Infection of skin and subcutaneous tissues Diagnosis of Infection of skin and subcutaneous tissues
B55.1 Cutaneous leishmaniasis Infection of skin and subcutaneous tissues Diagnosis of Infection of skin and subcutaneous tissues
B78.1 Cutaneous strongyloidiasis Infection of skin and subcutaneous tissues Diagnosis of Infection of skin and subcutaneous tissues
B85 Pediculosis and phthiriasis Infection of skin and subcutaneous tissues Diagnosis of Infection of skin and subcutaneous tissues
B86 Scabies Infection of skin and subcutaneous tissues Diagnosis of Infection of skin and subcutaneous tissues
B87.0 Cutaneous myiasis Infection of skin and subcutaneous tissues Diagnosis of Infection of skin and subcutaneous tissues
B87.1 Wound myiasis Infection of skin and subcutaneous tissues Diagnosis of Infection of skin and subcutaneous tissues
B88 Other infestations Infection of skin and subcutaneous tissues Diagnosis of Infection of skin and subcutaneous tissues
L00 Staphylococcal scalded skin syndrome Infection of skin and subcutaneous tissues Diagnosis of Infection of skin and subcutaneous tissues
L01 Impetigo Infection of skin and subcutaneous tissues Diagnosis of Infection of skin and subcutaneous tissues
L02 Cutaneous abscess, furuncle and carbuncle Infection of skin and subcutaneous tissues Diagnosis of Infection of skin and subcutaneous tissues
L03 Cellulitis Infection of skin and subcutaneous tissues Diagnosis of Infection of skin and subcutaneous tissues
L05.0 Pilonidal cyst with abscess Infection of skin and subcutaneous tissues Diagnosis of Infection of skin and subcutaneous tissues
L08 Other local infections of skin and subcutaneous tissue Infection of skin and subcutaneous tissues Diagnosis of Infection of skin and subcutaneous tissues
L30.3 Infective dermatitis Infection of skin and subcutaneous tissues Diagnosis of Infection of skin and subcutaneous tissues
P38 Omphalitis of newborn with or without mild haemorrhage Infection of skin and subcutaneous tissues Diagnosis of Infection of skin and subcutaneous tissues
P39.4 Neonatal skin infection Infection of skin and subcutaneous tissues Diagnosis of Infection of skin and subcutaneous tissues

API

To Export Phenotype Details:

Format API
XML site_root/api/v1/public/phenotypes/PH308/version/616/detail/?format=xml
JSON site_root/api/v1/public/phenotypes/PH308/version/616/detail/?format=json
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get details of phenotype

details = get_phenotype_detail_by_version('PH308', '616', api_client=client)

To Export Phenotype Code List:

Format API
XML site_root/api/v1/public/phenotypes/PH308/version/616/export/codes/?format=xml
JSON site_root/api/v1/public/phenotypes/PH308/version/616/export/codes/?format=json
CSV site_root/phenotypes/PH308/version/616/export/codes/
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get codelists of phenotype

codelists = get_phenotype_code_list('PH308', '616', api_client=client)

Version History

Version
ID		 Name Owner Publish date
616 Infection of skin and subcutaneous tissues ieuan.scanlon 2021-10-06 currently shown

Export - export all codes into a csv file/JSON/XML for the current phenotype version.

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