Phenotypes > Sleep apnoea

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Sleep apnoea

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

ID
PH309
Version ID
618
Type
Disease or Syndrome
Data Sources
CPRD GOLD , HES Admitted Patient Care data for CPRD GOLD
Valid event data range
01/01/1999 - 01/07/2016
Sex
♀  Female ♂  Male
Agreement Date
2019-05-20
Coding system
Read codes v2 ICD10 codes Med codes
Collections
CALIBER Phenotype Library
Tags
No tags

Definition

At the specified date, a patient is defined as having had 'Sleep apnoea' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Primary care

  1. 'Sleep apnoea' diagnosis or history of diagnosis during a consultation

OR Secondary care

  1. ALL diagnoses of 'Sleep apnoea' or history of diagnosis during a hospitalization

Implementation


https://kclhi.org/phenoflow/phenotype/download/901

Publications

  • Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

Expand All  /  Collapse All
Rows: 8
Code Description Disease Medcode Category
Fy03.00 Sleep apnoea Sleep apnoea 7603.0 Diagnosis of sleep apnoea
Fy03.11 Obstructive sleep apnoea Sleep apnoea 8148.0 Diagnosis of sleep apnoea
H5B..00 Sleep apnoea Sleep apnoea 23779.0 Diagnosis of sleep apnoea
H5B0.00 Obstructive sleep apnoea Sleep apnoea 20748.0 Diagnosis of sleep apnoea
R005100 [D]Insomnia with sleep apnoea Sleep apnoea 48539.0 Diagnosis of sleep apnoea
R005300 [D]Hypersomnia with sleep apnoea Sleep apnoea 36301.0 Diagnosis of sleep apnoea
R005311 [D]Sleep apnoea syndrome Sleep apnoea 2506.0 Diagnosis of sleep apnoea
R005312 [D]Syndrome sleep apnoea Sleep apnoea 20438.0 Diagnosis of sleep apnoea
Rows: 8
Code Description Disease ReadcodeDescr Readcode
20438.0 Diagnosis of sleep apnoea Sleep apnoea [D]Syndrome sleep apnoea R005312
20748.0 Diagnosis of sleep apnoea Sleep apnoea Obstructive sleep apnoea H5B0.00
23779.0 Diagnosis of sleep apnoea Sleep apnoea Sleep apnoea H5B..00
2506.0 Diagnosis of sleep apnoea Sleep apnoea [D]Sleep apnoea syndrome R005311
36301.0 Diagnosis of sleep apnoea Sleep apnoea [D]Hypersomnia with sleep apnoea R005300
48539.0 Diagnosis of sleep apnoea Sleep apnoea [D]Insomnia with sleep apnoea R005100
7603.0 Diagnosis of sleep apnoea Sleep apnoea Sleep apnoea Fy03.00
8148.0 Diagnosis of sleep apnoea Sleep apnoea Obstructive sleep apnoea Fy03.11
Rows: 1
Code Description Disease Category
G47.3 Sleep apnoea Sleep apnoea Diagnosis of sleep apnoea

API

To Export Phenotype Details:

Format API
XML site_root/api/v1/public/phenotypes/PH309/version/618/detail/?format=xml
JSON site_root/api/v1/public/phenotypes/PH309/version/618/detail/?format=json
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get details of phenotype

details = get_phenotype_detail_by_version('PH309', '618', api_client=client)

To Export Phenotype Code List:

Format API
XML site_root/api/v1/public/phenotypes/PH309/version/618/export/codes/?format=xml
JSON site_root/api/v1/public/phenotypes/PH309/version/618/export/codes/?format=json
CSV site_root/phenotypes/PH309/version/618/export/codes/
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get codelists of phenotype

codelists = get_phenotype_code_list('PH309', '618', api_client=client)

Version History

Version
ID		 Name Owner Publish date
618 Sleep apnoea ieuan.scanlon 2021-10-06 currently shown

Export - export all codes into a csv file/JSON/XML for the current phenotype version.

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