HDL Cholesterol

Shah A

PH31 / 62 Clinical-Coded Phenotype

  1. Overview

    Phenotype Type
    Biomarker
    Phenotype UUID
    NojLofAabaBVkaaLh6MCeH
    Sex
    Both
    Valid Event Date Range
    01/01/1999 - 01/07/2016
    Coding System
    Read codes v2
    Data Sources
    CPRD GOLD
    Collections
    Phenotype Library
    Tags
    No data

  2. Definition

    In the Clinical Practice Research Datalink (CPRD, primary care data) we extracted High Density Liporotein (HDL) measurements using the structured data component of the test CPRD table (entity type 175 and 288) combined with the Read terms below.

    Measurements were extracted from the data2 field and units from the data3 field. We extracted all values recorded in mmol/L (SUM lookup 96) or mg/dL (SUM lookup 82) and filtered out values below 0 or above 50 mmol/L. Where multiple measurements were present in a single consultation (identified by the consid identifier) we calculated the average.

  3. Implementation

    Phenoflow ID
    https://kclhi.org/phenoflow/phenotype/download/111

    Implementation

    No data

  4. Clinical Code List

  5. Publication

    No publications

    Citation Example

    Shah A. PH31 / 62 - HDL Cholesterol. Phenotype Library [Online]. 06 October 2021. Available from: http://phenotypes.healthdatagateway.org/phenotypes/PH31/version/62/detail/. [Accessed 10 September 2024]

  6. API

    To Export Phenotype Details:

    FormatAPI
    JSON site_root/api/v1/phenotypes/PH31/version/62/detail/?format=json
    R Package

    # Download here

    library(ConceptLibraryClient)


    # Connect to API

    client = ConceptLibraryClient::Connection$new(public=TRUE)


    # Get details of phenotype

    phenotype_details = client$phenotypes$get_detail(
     'PH31',
     version_id=62
    )

    Py Package

    # Download here

    from pyconceptlibraryclient import Client


    # Connect to API

    client = Client(public=True)


    # Get codelist of phenotype

    phenotype_codelist = client.phenotypes.get_detail(
     'PH31',
     version_id=62
    )

    To Export Phenotype Code List:

    FormatAPI
    JSON site_root/api/v1/phenotypes/PH31/version/62/export/codes/?format=json
    CSV site_root/phenotypes/PH31/version/62/export/codes/
    R Package

    # Download here

    library(ConceptLibraryClient)


    # Connect to API

    client = ConceptLibraryClient::Connection$new(public=TRUE)


    # Get codelist of phenotype

    phenotype_codelist = client$phenotypes$get_codelist(
     'PH31',
     version_id=62
    )

    Py Package

    # Download here

    from pyconceptlibraryclient import Client


    # Connect to API

    client = Client(public=True)


    # Get codelist of phenotype

    phenotype_codelist = client.phenotypes.get_codelist(
     'PH31',
     version_id=62
    )

  7. Version History

    Version IDNameOwnerPublish date
    62 HDL Cholesterol ieuan.scanlon2021-10-06currently shown