Phenotype Library | phenotype: HDL Cholesterol

HDL Cholesterol

Shah A

PH31

Version ID

Type

Biomarker

Data Sources

CPRD GOLD

Valid event data range

01/01/1999 - 01/07/2016

Sex

♀ Female ♂ Male

Agreement Date

2012-11-23

Coding system

Read codes v2

Collections

Phenotype Library

Definition

In the Clinical Practice Research Datalink (CPRD, primary care data) we extracted High Density Liporotein (HDL) measurements using the structured data component of the test CPRD table (entity type 175 and 288) combined with the Read terms below.

Measurements were extracted from the data2 field and units from the data3 field. We extracted all values recorded in mmol/L (SUM lookup 96) or mg/dL (SUM lookup 82) and filtered out values below 0 or above 50 mmol/L. Where multiple measurements were present in a single consultation (identified by the consid identifier) we calculated the average.

Implementation

PhenoFlow Implementation:

https://kclhi.org/phenoflow/phenotype/download/111

Publications

No data available

Clinical Code List

CSV

JSON

XML

Expand All / Collapse All

C777/2693 HDL Cholesterol - Primary Care - Plasma measurements - Read codes v2

Rows: 2

Code	Description
44d2.00	Plasma random HDL cholesterol level
44dA.00	Plasma HDL cholesterol level

C778/2695 HDL Cholesterol - Primary Care - Serum measurements - Read codes v2

Rows: 2

Code	Description
44P5.00	Serum HDL cholesterol level
44PC.00	Serum random HDL cholesterol level

API

To Export Phenotype Details:

Format	API
XML	site_root/api/v1/public/phenotypes/PH31/version/62/detail/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH31/version/62/detail/?format=json
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get details of phenotype details = get_phenotype_detail_by_version('PH31', '62', api_client=client)`

To Export Phenotype Code List:

Format	API
XML	site_root/api/v1/public/phenotypes/PH31/version/62/export/codes/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH31/version/62/export/codes/?format=json
CSV	site_root/phenotypes/PH31/version/62/export/codes/
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get codelists of phenotype codelists = get_phenotype_code_list('PH31', '62', api_client=client)`

Version History

Version ID	Name	Owner	Publish date
62	HDL Cholesterol	ieuan.scanlon	2021-10-06	currently shown